View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_low_13 (Length: 238)
Name: NF10307_low_13
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38453188 - 38453410
Alignment:
| Q |
1 |
tataaaacaattgaaaaaaggtgataatagtggtaaccatgaatactctatcaaattttccatattagttttttgttcaaaaaatcaaataatttacctg |
100 |
Q |
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| T |
38453188 |
tatataacaattgaaaaaaggtgataatagtggtaaccatgaatactatatcaaattttccataatagttttttgttcaaaaaatcaaataatttacctg |
38453287 |
T |
|
| Q |
101 |
atgccaagttgcaaattaagagtcagataattgccatctaatcttgcttttccttcttattattatgtgttacttctgaatatggtctaattttctccac |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38453288 |
atgccaagttgcaaattaagagtcagataatcgccatctaatcttgcttttccttcttattattatgtgttacttctgaatatggtctaattttctccac |
38453387 |
T |
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| Q |
201 |
aatcagaactctttgcatatatt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38453388 |
aatcagaactctttgcatatatt |
38453410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 39849378 - 39849246
Alignment:
| Q |
1 |
tataaaacaattgaaa-aaaggtgataatagtggtaaccatgaatactctatcaaattttccatattagttt-tttgttcaaaaaatcaaataatttacc |
98 |
Q |
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|||| |||| |||||| ||||||||||||||||||||||| ||||||| |||||||||||||||| || ||| || || |||| ||||||||||||||| |
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| T |
39849378 |
tatagaacagttgaaagaaaggtgataatagtggtaaccacgaatactatatcaaattttccataatactttaattttttaaaagatcaaataatttacc |
39849279 |
T |
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| Q |
99 |
tgatgccaagttgcaaattaagagtcagataat |
131 |
Q |
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| T |
39849278 |
tgatgccaagttgcagattaagattcatataat |
39849246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 38633440 - 38633374
Alignment:
| Q |
153 |
cttcttattattatgtgttacttctgaatatggtctaattttctccacaatcagaactctttgcata |
219 |
Q |
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| T |
38633440 |
cttcttattattatgtgttacttctgaatactgtctaattttctccacaattagaactccttgcata |
38633374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 39849145 - 39849079
Alignment:
| Q |
157 |
ttattattatgtgttacttctgaatatggtctaattttctccacaatcagaactctttgcatatatt |
223 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||| | ||||| ||||||||||| |
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| T |
39849145 |
ttattattatgtgttacttctgaatacggtctgattttctccacaattaaaactccttgcatatatt |
39849079 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 36952093 - 36952046
Alignment:
| Q |
84 |
atcaaataatttacctgatgccaagttgcaaattaagagtcagataat |
131 |
Q |
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| T |
36952093 |
atcaaataatttacctgatgccaagctgcaaattaagcttcagataat |
36952046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 38633569 - 38633524
Alignment:
| Q |
84 |
atcaaataatttacctgatgccaagttgcaaattaagagtcagata |
129 |
Q |
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||||| ||||||||||| |||||||||||| ||||||| ||||||| |
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|
| T |
38633569 |
atcaagtaatttacctgttgccaagttgcagattaagattcagata |
38633524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 7045526 - 7045609
Alignment:
| Q |
141 |
atcttgcttttccttcttattattatgtgttacttctgaatatggtctaattttctccacaatcagaactctttgcatatattt |
224 |
Q |
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| T |
7045526 |
atcttgctttttgttcctattattatatgttacttctgaatcctatttaattttctccacaattagaactccttgcatatattt |
7045609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 44475356 - 44475299
Alignment:
| Q |
154 |
ttcttattattatgtgttacttctgaatatggtctaattttctccacaatcagaactc |
211 |
Q |
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|||||||| ||||||||||||| |||||| ||| ||||||||||||||| ||||||| |
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| T |
44475356 |
ttcttatttttatgtgttacttttgaatactgtcgaattttctccacaattagaactc |
44475299 |
T |
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