View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_low_14 (Length: 237)
Name: NF10307_low_14
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12083939 - 12084154
Alignment:
| Q |
1 |
caaacttttcggctatagcagtacaacaagaactttcctgtaaccatatgttaacatattaactgtgattcttataatcaaataattaaattaaccaaaa |
100 |
Q |
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| T |
12083939 |
caaacttttcggctatagcagtacaacaagaactttcctgtaaccatatgttaac--------tgtgattcttataatcaaataattaaattaaccaaaa |
12084030 |
T |
|
| Q |
101 |
ttaaaattagtcttctnnnnnnntta-tcattaggtaatttaagctctaattacctctcctgttgtcacatttttcacccatggatatattttctcgccc |
199 |
Q |
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|||||||| ||||||| ||| |||||||| |||||||| | | |||||||||||||||||||||||||| ||||||||||||||| |||| ||| |
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| T |
12084031 |
ttaaaattggtcttctaaaaaaattaatcattagggaatttaagttgtgattacctctcctgttgtcacattttttacccatggatatattgtctctccc |
12084130 |
T |
|
| Q |
200 |
tgaacaaaaatagtttgttagaat |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
12084131 |
tgaacaaaaatagtttgttagaat |
12084154 |
T |
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