View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_low_15 (Length: 235)
Name: NF10307_low_15
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8288229 - 8288006
Alignment:
| Q |
1 |
tgatctttcaaattttgtgagtctaacgttttgaaccg-taaaaggtttttaggactaaacagcgatccaagtggtggagttgctgcattggcccttact |
99 |
Q |
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||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8288229 |
tgatcttccaaattttgtgagtctaccgttttgaaccaataaaaggtttttaggactaaacagcgatccaagtggtggagttgctgcattggcccttact |
8288130 |
T |
|
| Q |
100 |
tgttcaatgggtaaacgatcaaaccccaaaatcgaagcaaaagagtaaatgcatacatgacacaaaaaacctcacatatttgcattcgccctgtcgcaag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8288129 |
tgttcaatgggtaaacgatcaaaccccaaaatcgaagcaaaagagtaaatgcatacatgacacaaaaaacctcacatatttgcattcgccctgtcgcaag |
8288030 |
T |
|
| Q |
200 |
taatggatcctgaaatgaaaaaac |
223 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
8288029 |
taatggatcctgaaatgaaaaaac |
8288006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 153
Target Start/End: Complemental strand, 37647730 - 37647615
Alignment:
| Q |
39 |
taaaaggtttttaggactaaacagcgatccaagtggtggagttgctgcattggcccttacttgttcaatgggtaaacgatcaaacc-ccaaaatcgaagc |
137 |
Q |
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||||||||||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||| ||| |||| |||| |
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| T |
37647730 |
taaaaggttttcaggactaaatagatttccaagtggtggagttgctgcattgccccttacttgttcaatggataaatggtcaaaccgccagaatctaagc |
37647631 |
T |
|
| Q |
138 |
aaaagagtaaatgcat |
153 |
Q |
| |
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||||||||||| |||| |
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| T |
37647630 |
aaaagagtaaacgcat |
37647615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 37647541 - 37647482
Alignment:
| Q |
164 |
aaaaacctcacatatttgcattcgccctgtcgcaagtaatggatcctgaaatgaaaaaac |
223 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
37647541 |
aaaaacctcacatatttgcattagccctgccgcaagtaatggaacctgaaatgaaaaaac |
37647482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 29686199 - 29686314
Alignment:
| Q |
39 |
taaaaggtttttaggactaaacagcgatccaagtggtggagttgctgcattggcccttacttgttcaatgggtaaacgatcaaacc-ccaaaatcgaagc |
137 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||| || |||| |||| |
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| T |
29686199 |
taaaaggttttcaggactaaatagatttccaagtggtggagttgctggatttccccttacttattcaatgggtaagtgatcaaaccgtcagaatctaagc |
29686298 |
T |
|
| Q |
138 |
aaaagagtaaatgcat |
153 |
Q |
| |
|
|||||||||||||||| |
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| T |
29686299 |
aaaagagtaaatgcat |
29686314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 29687747 - 29687862
Alignment:
| Q |
39 |
taaaaggtttttaggactaaacagcgatccaagtggtggagttgctgcattggcccttacttgttcaatgggtaaacgatcaaacc-ccaaaatcgaagc |
137 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||| || |||| |||| |
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| T |
29687747 |
taaaaggttttcaggactaaatagatttccaagtggtggagttgctggatttccccttacttattcaatgggtaagtgatcaaaccgtcagaatctaagc |
29687846 |
T |
|
| Q |
138 |
aaaagagtaaatgcat |
153 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
29687847 |
aaaagagtaaatgcat |
29687862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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