View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_low_17 (Length: 227)
Name: NF10307_low_17
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 31385420 - 31385227
Alignment:
| Q |
18 |
acaattgaactctattgaaacataacaagtcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaacacaagaactcaaacaag |
117 |
Q |
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| T |
31385420 |
acaattgaactctattgaaacataacaaatcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaatacaagaactcaaacaag |
31385321 |
T |
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| Q |
118 |
aacatctcttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaaccggttcat |
211 |
Q |
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| T |
31385320 |
agcatctcttttcacaccgttcatagctataattctcccagttattatagcctcagcggttctctaccggctcgacccattggaaccggttcat |
31385227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 31370793 - 31370610
Alignment:
| Q |
25 |
aactctattgaaacataacaagtcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaacacaagaactcaaacaagaacatct |
124 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
31370793 |
aactctattgaaacataacaaatcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaatacaagaactcaaccaagaacatct |
31370694 |
T |
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| Q |
125 |
cttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaaccggtt |
208 |
Q |
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| T |
31370693 |
cttttcacaccgttcatagctattattctcccagttattatagcctcggcggttttcaaccggctcgaccctttcgaaccggtt |
31370610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 31405931 - 31405743
Alignment:
| Q |
20 |
aattgaactctattgaaacataacaag-tcaccaccaccactaaacctaaccagttcaaagatgtcgaagtcaaacacaaacacaagaactcaaacaaga |
118 |
Q |
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|||| ||||||||||||||||||||| || || |||||||||||||| || ||||| ||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
31405931 |
aattcaactctattgaaacataacaaaatctcctccaccactaaaccttac-agttccaagatgtcggagtcaaacacagacacaagaactcaaacaaga |
31405833 |
T |
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| Q |
119 |
acatctcttttcacaccattcatagctataattctcccagttattatagcctcatcggttctctactggctcgaaccattggaaccggtt |
208 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||| ||||||| || || ||||||||| |
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| T |
31405832 |
acatctcttttcacaccgttcatagctattattctcccagttattatagcctcagcggttttctaccggctcgaccctttcgaaccggtt |
31405743 |
T |
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