View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10307_low_3 (Length: 639)
Name: NF10307_low_3
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10307_low_3 |
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| [»] scaffold0427 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 4 - 334
Target Start/End: Complemental strand, 46569448 - 46569119
Alignment:
| Q |
4 |
aggcatatatggcatatgaagatcttgttgtgatgttgatcgttacgacaaatttagattagaaaactctaagacataattatggttgttataaccaagt |
103 |
Q |
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| T |
46569448 |
aggcatatatggcatatgaagatcttgttgtgatgttgatcgttacgacaaatttagattagaaaactctaagacataattatggttgttataaccaagt |
46569349 |
T |
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| Q |
104 |
gacaagtagtacaaagaattattggtcaattatgacgagagtaagaatagcaaattcatatttactttcaagtttcaattaaacaattctagttgatgat |
203 |
Q |
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| T |
46569348 |
gacaagtagtacaaagaattgttggtcaattatgacgagagtaagaatagcaaattcatatttactttcaagtttcaattaaacaattctagttgatgat |
46569249 |
T |
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| Q |
204 |
ttgtctatattttcaaaatgaggtgtgtgagtgttgttgattctttcatatttaatttgttgactatttgaaagatacatggatgactattcccacatga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46569248 |
ttgtctatattttcaaaatgaggtgtgtgagtgttgttgattctttcatatttaatttgttgactatttgaaagatacatggatgactattcccacatga |
46569149 |
T |
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| Q |
304 |
aagttagttgttgcatggacattgagtgatg |
334 |
Q |
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| T |
46569148 |
aagttag-cgttgcatggacattgagtgatg |
46569119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 313 - 434
Target Start/End: Complemental strand, 46569113 - 46568991
Alignment:
| Q |
313 |
gttgcatggacattgagtgatgcatc-tggagaataaaatgacacaaatatattttttcttaatgtactaccttctaaacttatattttcatcttaggtg |
411 |
Q |
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| T |
46569113 |
gttgcatggacattgagtgatgcatcatggagaataaaatgacacaaatatattttttcttaatgtactaacttctaaacttatattttcatcttaggtg |
46569014 |
T |
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| Q |
412 |
gtcttttatgtttagtattaggg |
434 |
Q |
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| T |
46569013 |
gtcttttatgtttagtattaggg |
46568991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 433 - 621
Target Start/End: Complemental strand, 8008 - 7819
Alignment:
| Q |
433 |
ggcgctgtctagggtgggagagtctgataggtcttccaccataggtaagtttgatgtacggttagattatgatgttccacaaatgttatgatgcacaaca |
532 |
Q |
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| T |
8008 |
ggcgctgtctaggatgggtgagcctgataggtctcccaccgtaggtgagtttgatgtacggttagattatgatgttccacaaatgttatgatgcaccaca |
7909 |
T |
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| Q |
533 |
cacatcttacacatcctt-ttttatctctctcatctccttcctgttgtttctttcctgcgttcttctacaactactccaccaccacccat |
621 |
Q |
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| T |
7908 |
cacatcttacacatcctttttttatctctctcctctcctccctgttgtttctttcctgcgttcttctacaactactccaccaccacccat |
7819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 439 - 528
Target Start/End: Original strand, 6874 - 6963
Alignment:
| Q |
439 |
gtctagggtgggagagtctgataggtcttccaccataggtaagtttgatgtacggttagattatgatgttccacaaatgttatgatgcac |
528 |
Q |
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| T |
6874 |
gtctagggtgggagagtttgataggtctcccaccgtgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcac |
6963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 433 - 623
Target Start/End: Original strand, 4295946 - 4296138
Alignment:
| Q |
433 |
ggcgctgtctagggtgggagagtctgataggtcttccaccataggtaagtttgatgtacggttagattatgatgttccacaaatgttatgatgcacaaca |
532 |
Q |
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| T |
4295946 |
ggcgctgtctagggtgggtgagcctgataggtctcccaccgtaggtgagtttgatgtacggttagattatgatgttccacaaatgttatgatgcaccaca |
4296045 |
T |
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| Q |
533 |
cacatcttacacatcc--ttttttatctctctcatctccttcctgttgtttctttcctgcgttcttctacaactactccaccaccacccatat |
623 |
Q |
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| T |
4296046 |
cacatcttacacatccttttttttatctctctcctctcattcctgttgtttctttcctgcgttcttctacaactattccaccaccacccatat |
4296138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 439 - 528
Target Start/End: Complemental strand, 4297093 - 4297004
Alignment:
| Q |
439 |
gtctagggtgggagagtctgataggtcttccaccataggtaagtttgatgtacggttagattatgatgttccacaaatgttatgatgcac |
528 |
Q |
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| T |
4297093 |
gtctagggtgggagagtttgataggtctcccaccgtgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcac |
4297004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 439 - 528
Target Start/End: Original strand, 3385251 - 3385340
Alignment:
| Q |
439 |
gtctagggtgggagagtctgataggtcttccaccataggtaagtttgatgtacggttagattatgatgttccacaaatgttatgatgcac |
528 |
Q |
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| T |
3385251 |
gtctagggtgggagagtttgataggtcttccaccatgagcaagtttaatgtatggttagattgtgaggttccacaaatattatgatgcac |
3385340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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