View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10307_low_4 (Length: 628)

Name: NF10307_low_4
Description: NF10307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10307_low_4
NF10307_low_4
[»] chr3 (1 HSPs)
chr3 (12-344)||(35710630-35710965)
[»] chr7 (3 HSPs)
chr7 (429-613)||(47104259-47104443)
chr7 (354-433)||(47104497-47104576)
chr7 (487-542)||(47104165-47104220)
[»] chr6 (4 HSPs)
chr6 (469-613)||(26010122-26010266)
chr6 (469-613)||(26127615-26127759)
chr6 (469-590)||(26011350-26011471)
chr6 (469-521)||(25574658-25574710)
[»] chr8 (1 HSPs)
chr8 (429-613)||(24062142-24062333)
[»] chr4 (1 HSPs)
chr4 (555-613)||(31609398-31609456)
[»] chr5 (1 HSPs)
chr5 (555-613)||(12630435-12630494)
[»] chr1 (1 HSPs)
chr1 (570-613)||(45287340-45287383)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 344
Target Start/End: Original strand, 35710630 - 35710965
Alignment:
Q  12 atgaaacgaaaagaataacttggaccaactgcatgtgatatgatatgtcaatgtttggtaaggctaaatagtgtcacgcgaaacgaccggacttagcatc 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35710630 atgaaacgaaaagaataacttggaccaattgcatgtgatatgatatgtcaatgtttggtaaggcaaaatagtgtcacgcgaaacgaccggacttagcatc 35710729  T
Q  112 aattagcttaataccacattggaacaaaaaattcgataaaagataatgaagaaagttgtgatgctttttt---acgtgaatctcaggagcagaatcccaa 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  35710730 aattagcttaataccacattggaacaaaaaattcgaaaaaagataaagaagaaagttgtgatgctttttttacacgtgaatctcaggagcagaatcccaa 35710829  T
Q  209 atgtgcaaaatatgcacttttgaatttatcaaagcttgttcatacatcatcattataagatatt--aagcttttcctactgttagcgtatgttatgcact 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||| ||||||| | |||| |||||||||    
T  35710830 atgtgcaaaatatgcacttttgaatttatcaaagcttgttcatacatcatcattataagatattagaagc-tttcttactgtt-gtgtatattatgcact 35710927  T
Q  307 aaaacatgattaatatcatgttccatgaataagttgct 344  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35710928 aaaacatgattaatatcatgttccatgaataagttgct 35710965  T

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Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 429 - 613
Target Start/End: Complemental strand, 47104443 - 47104259
Alignment:
Q  429 aagtttcttattttcataccatggtctctcttt-gtgtaagaatggagttgtatggttcatattaactacaaacactatgattcaaacacgggatgcttt 527  Q
    |||||||||||||| |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47104443 aagtttcttatttttataccatggtctctcttttgtataagaatggagttgtatggt-catattaactacaaacactatgattcaaacacgggatgcttt 47104345  T
Q  528 aggtattcgatttaagatcaaagtgctatattcctcaaacatggggctataggtatttaatttatgtttctgtttatattgaaggt 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  47104344 aggtattcgatttaagatcaaagtgctatattcctcaaacatggggctataagtatttaatttatgtttctatttataatgaaggt 47104259  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 354 - 433
Target Start/End: Complemental strand, 47104576 - 47104497
Alignment:
Q  354 aagcaagatttattttatcccctttctcttgatcaacaaaattaaagaataattgaaataaattttaagtctttgaagtt 433  Q
    ||||||| |||||  ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47104576 aagcaagttttatagtatcctctttttcttgatcaacaaaattaaagaataattgaaataaattttaagtctttgaagtt 47104497  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 542
Target Start/End: Complemental strand, 47104220 - 47104165
Alignment:
Q  487 atattaactacaaacactatgattcaaacacgggatgctttaggtattcgatttaa 542  Q
    |||||||||||||||||||||||||||| |||||| ||| || | ||| |||||||    
T  47104220 atattaactacaaacactatgattcaaatacgggaggctataaggatttgatttaa 47104165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 469 - 613
Target Start/End: Original strand, 26010122 - 26010266
Alignment:
Q  469 aatggagttgtatggttcatattaactacaaacactatgattcaaacacgggatgctttaggtattcgatttaagatcaaagtgctatattcctcaaaca 568  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||  || || ||||| ||||||| ||||||||  |||||||||||||||    
T  26010122 aatggagttgtatggttcatattaactacaaagactatgattcaaacccgggagactatatgtattagatttaatatcaaagtcttatattcctcaaaca 26010221  T
Q  569 tggggctataggtatttaatttatgtttctgtttatattgaaggt 613  Q
    |||||||||||||||||||||||||||||| || ||| |||||||    
T  26010222 tggggctataggtatttaatttatgtttctattgataatgaaggt 26010266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 469 - 613
Target Start/End: Original strand, 26127615 - 26127759
Alignment:
Q  469 aatggagttgtatggttcatattaactacaaacactatgattcaaacacgggatgctttaggtattcgatttaagatcaaagtgctatattcctcaaaca 568  Q
    |||||||||||||||||||||||||||||||| |||||||||||||   ||||  || || ||||| ||||||| ||||||||  |||||||||||||||    
T  26127615 aatggagttgtatggttcatattaactacaaagactatgattcaaatctgggagactatatgtattagatttaatatcaaagtcttatattcctcaaaca 26127714  T
Q  569 tggggctataggtatttaatttatgtttctgtttatattgaaggt 613  Q
    ||||||||||| |||||||||||||||||| || ||| |||||||    
T  26127715 tggggctatagatatttaatttatgtttctattgataatgaaggt 26127759  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 469 - 590
Target Start/End: Original strand, 26011350 - 26011471
Alignment:
Q  469 aatggagttgtatggttcatattaactacaaacactatgattcaaacacgggatgctttaggtattcgatttaagatcaaagtgctatattcctcaaaca 568  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  ||||  || || ||||| ||||||| ||||||||  |||||||||||||||    
T  26011350 aatggagttgtatggttcatattaactacaaagactatgattcaaacctgggagactatatgtattagatttaatatcaaagtcttatattcctcaaaca 26011449  T
Q  569 tggggctataggtatttaattt 590  Q
    ||||||||||| ||||||||||    
T  26011450 tggggctatagatatttaattt 26011471  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 469 - 521
Target Start/End: Original strand, 25574658 - 25574710
Alignment:
Q  469 aatggagttgtatggttcatattaactacaaacactatgattcaaacacggga 521  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  25574658 aatggagttgtatggttcatattaactacaaagactatgattcaaactcggga 25574710  T

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Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 429 - 613
Target Start/End: Complemental strand, 24062333 - 24062142
Alignment:
Q  429 aagtttcttattttcataccatggtctctctttgtgtaa---gaatggagttgtat--ggttcatattaactacaaacactat--gattcaaacacggga 521  Q
    |||||| ||||||  |||||||||||| | || ||||||   || |||||||||||  |||||||||||| ||||| ||||||  |  | ||||||||||    
T  24062333 aagtttattatttgtataccatggtctatgttggtgtaatccgagtggagttgtatatggttcatattaagtacaaccactataggtattaaacacggga 24062234  T
Q  522 tgctttaggtattcgatttaagatcaaagtgctatattcctcaaacatggggctataggtatttaatttatgtttctgtttatattgaaggt 613  Q
     ||| || ||||||| ||| |||| |||||  |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  24062233 ggctataagtattcggttttagattaaagttttatattcctcaaacatggggctatagatatttaatttatgtttctatttataatgaaggt 24062142  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 555 - 613
Target Start/End: Original strand, 31609398 - 31609456
Alignment:
Q  555 atattcctcaaacatggggctataggtatttaatttatgtttctgtttatattgaaggt 613  Q
    |||||| |||||||||||||| |||||||||| ||||||||||| ||||||||| ||||    
T  31609398 atattcttcaaacatggggctgtaggtatttagtttatgtttctatttatattgtaggt 31609456  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 555 - 613
Target Start/End: Complemental strand, 12630494 - 12630435
Alignment:
Q  555 atattcctcaaacatgggg-ctataggtatttaatttatgtttctgtttatattgaaggt 613  Q
    |||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||    
T  12630494 atattcttcaaacatgggggctataggtatttagtttatgtttctatttatattgtaggt 12630435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 570 - 613
Target Start/End: Complemental strand, 45287383 - 45287340
Alignment:
Q  570 ggggctataggtatttaatttatgtttctgtttatattgaaggt 613  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  45287383 ggggctataggtatttagtttatgtttctatttatattgtaggt 45287340  T

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