View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10308_high_1 (Length: 704)

Name: NF10308_high_1
Description: NF10308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10308_high_1
NF10308_high_1
[»] chr5 (1 HSPs)
chr5 (18-696)||(1717949-1718627)
[»] chr1 (20 HSPs)
chr1 (36-304)||(14508547-14508818)
chr1 (36-237)||(14470413-14470627)
chr1 (46-131)||(14507249-14507334)
chr1 (31-111)||(6326682-6326762)
chr1 (87-144)||(14485064-14485121)
chr1 (48-122)||(28239162-28239236)
chr1 (49-118)||(12535398-12535467)
chr1 (160-247)||(47569331-47569418)
chr1 (49-111)||(12540654-12540716)
chr1 (155-245)||(28326524-28326614)
chr1 (37-93)||(47569241-47569297)
chr1 (49-104)||(12532934-12532989)
chr1 (48-93)||(4872625-4872670)
chr1 (37-94)||(28326400-28326457)
chr1 (159-259)||(28231703-28231803)
chr1 (48-91)||(28231589-28231632)
chr1 (194-233)||(28239431-28239470)
chr1 (160-234)||(24621574-24621648)
chr1 (156-237)||(6326535-6326616)
chr1 (469-530)||(14508414-14508475)
[»] chr2 (3 HSPs)
chr2 (36-457)||(9066366-9066772)
chr2 (40-124)||(9068553-9068637)
chr2 (591-691)||(9066903-9067004)
[»] chr3 (1 HSPs)
chr3 (36-119)||(47924836-47924919)
[»] chr6 (1 HSPs)
chr6 (31-115)||(384619-384703)


Alignment Details
Target: chr5 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 18 - 696
Target Start/End: Original strand, 1717949 - 1718627
Alignment:
Q  18 acatcaccccttgtgttgtcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717949 acatcaccccttgtgttgtcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggc 1718048  T
Q  118 attaaaatacatggatccaagtgtttatgttcctactgaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718049 attaaaatacatggatccaagtgtttatgttcctactgaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacct 1718148  T
Q  218 attgttgctggttatcactcggtgattggtgaaccatacaaaggagaaggacaaatcgataagattgcacaattggtggaaacattgtgatgttacaaat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  1718149 attgttgctggttatcactcggtgattggtgaaccatacaaaggagaaggacaaatcgataagattgcacaattggtggaaacattgcgacgttacaaat 1718248  T
Q  318 taaactttgccggtacaattcgactccgattaattatggttatgattataccaaagagactatttaatgtgggcttgttcaactaagaattgacctcatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  1718249 taaactttgccggtacaattcgactccgattaattatggttatgattataccaaagagactatttaatgtgggcttgttcaactaagcattgacgtcatc 1718348  T
Q  418 gaaagacaatggttgcagaccaattagtctctctttctctgtaacatctaagaaaataagaatggtgcagtggaacttgtttgtggtgtgtagtttacat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718349 gaaagacaatggttgcagaccaattagtctctctttctctgtaacatctaagaaaataagaatggtgcagtggaacttgtttgtggtgtgtagtttacat 1718448  T
Q  518 gctttctagttttatgcttttgtttttcatttcacttctgtatgttagttaattgccaagttaatggacaataataatgtttaatgtattctttaatcat 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1718449 gctttctagttttatgcttttgtttttcatttcacttctgtatgttagttaattgccaagttaatggacaataataatgtttaatgtactctttaatcat 1718548  T
Q  618 gcttgtatttggctaatttatacccttcgaacagatggtatctatgtttcttattttttgctctttgattatgcctatg 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718549 gcttgtatttggctaatttatacccttcgaacagatggtatctatgtttcttattttttgctctttgattatgcctatg 1718627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 3e-84; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 36 - 304
Target Start/End: Complemental strand, 14508818 - 14508547
Alignment:
Q  36 tcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatggatcc 135  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||    
T  14508818 tcacatatcataatctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttagaaaattggaggcat------acatggatcc 14508725  T
Q  136 aagtgtttatgttcctac---------tgaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgct 226  Q
    |||||||||||||| |||         |||| |||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  14508724 aagtgtttatgttcttacgttagttactgaaggagaggtgaaagctgctaaaagtacaatcgctctaatgataaaaggtggtgtcaaacctattgttgct 14508625  T
Q  227 ggttatcactcggtgattggtgaaccatacaaaggagaaggacaaatcgataagattgcacaattggtggaaacattg 304  Q
     ||| |||||||||||||| ||||| ||||||||||||||||| | | |||||||||||| || |||| |||||||||    
T  14508624 agttttcactcggtgattgatgaactatacaaaggagaaggacgagttgataagattgcataaatggttgaaacattg 14508547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 14470627 - 14470413
Alignment:
Q  36 tcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaata----catgg 131  Q
    |||||| || ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||||| ||||||| |||| ||||||    |||||    
T  14470627 tcacatgtcgtaatctaatctttggttgttgcatcattggtcaatttaaaaaagcaattgccttgtttagagaattggaagcatcaaaatacatgcatgg 14470528  T
Q  132 atccaagtgtttatgttcctact---------gaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgt 222  Q
    |||||||| ||||||||| ||||         ||||||| | |||||   |||||| |||||| | |||| ||| |||||||||||||| || |||||||    
T  14470527 atccaagtttttatgttcttactttaattgacgaaagagtgctgaaattcgctaaaggtacaattactctaatggtaaaaggtggtgtcgaatctattgt 14470428  T
Q  223 tgctggttatcactc 237  Q
    || | ||||||||||    
T  14470427 tgttagttatcactc 14470413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 14507334 - 14507249
Alignment:
Q  46 taatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatgg 131  Q
    ||||||||||| ||| | ||||||||||||||||||| || |||||||||||||||||||| ||||||  |||| |||||||||||    
T  14507334 taatctaatctttggctgttgcatcgttggtcaatttgaaaaagcaattgccttgtttagagaattggtagcatcaaaatacatgg 14507249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 6326762 - 6326682
Alignment:
Q  31 tgttgtcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaatt 111  Q
    ||||||||| || ||| ||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||| ||||||    
T  6326762 tgttgtcacttaccatcatctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgtttaaaaaatt 6326682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 14485121 - 14485064
Alignment:
Q  87 aagcaattgccttgtttagaaaattggaggcattaaaatacatggatccaagtgttta 144  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  14485121 aagcaattgccttgtttagagaattggaagcatcaaaatacatggatccaagtgttta 14485064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 28239162 - 28239236
Alignment:
Q  48 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaa 122  Q
    ||||| ||||||||||||||||| | |||||||||||||| ||||||| ||| |||| | |||||||||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttctttatagaattggaggcattaa 28239236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 12535467 - 12535398
Alignment:
Q  49 tctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggca 118  Q
    |||||||||||| |||||||||   |||||||||||||||||||||||| |||||||| ||||| |||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaattgccatgtttagagaattgaaggca 12535398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 47569331 - 47569418
Alignment:
Q  160 agaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctggttatcactcggtgattggt 247  Q
    |||||||||| |||||||| || || ||||| | |||||||||||| |||||||||||| || |||| |||||||||| || ||||||    
T  47569331 agaggtgaaatctgctaaatgtgcagctgctttgatgataaaaggtagtgtcaaacctaatgctgctagttatcactctgttattggt 47569418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 12540654 - 12540716
Alignment:
Q  49 tctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaatt 111  Q
    |||| ||||||| |||||||||  |||||||||||| ||||||||||||||||||||| ||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatt 12540716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 245
Target Start/End: Original strand, 28326524 - 28326614
Alignment:
Q  155 gaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctggttatcactcggtgattg 245  Q
    ||||||||||||||| |||||||||||  |   ||| | ||||||||||||||| ||| ||||| ||||||| ||||||||||||| ||||    
T  28326524 gaaagagaggtgaaatctgctaaaagtgtagtagctgtcatgataaaaggtggtctcagacctaatgttgctagttatcactcggttattg 28326614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 47569241 - 47569297
Alignment:
Q  37 cacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaat 93  Q
    ||||||||| ||||||| |||||||||||||||| | |||||||| |||||||||||    
T  47569241 cacatatcaaaatctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  49 tctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgttta 104  Q
    |||||||||||| |||| ||||   |||||||||||||||||||||||||||||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 4872625 - 4872670
Alignment:
Q  48 atctaatctatggttattgcatcgttggtcaatttaaacaagcaat 93  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||    
T  4872625 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 4872670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 28326400 - 28326457
Alignment:
Q  37 cacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaatt 94  Q
    |||||||||| ||||||||| ||| ||||| ||| | |||||||||||||||||||||    
T  28326400 cacatatcatcatctaatctttggctattgtatcatcggtcaatttaaacaagcaatt 28326457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 28231703 - 28231803
Alignment:
Q  159 gagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctggttatcactcggtgattggtgaaccatacaa 258  Q
    ||||||||| | |||||||||||  | | ||| | |||||||||||||||||||||||||  |||||| |||| ||||| || |||| || || ||||||    
T  28231703 gagaggtgagatctgctaaaagtgtagcagctatgatgataaaaggtggtgtcaaacctaacgttgctagttaccactcagttattgatggactatacaa 28231802  T
Q  259 a 259  Q
    |    
T  28231803 a 28231803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  48 atctaatctatggttattgcatcgttggtcaatttaaacaagca 91  Q
    ||||||||||||||||||||||| | |||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 28239431 - 28239470
Alignment:
Q  194 atgataaaaggtggtgtcaaacctattgttgctggttatc 233  Q
    ||||||||||||||||||||||||| ||||||| ||||||    
T  28239431 atgataaaaggtggtgtcaaacctaatgttgcttgttatc 28239470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 24621648 - 24621574
Alignment:
Q  160 agaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctggttatca 234  Q
    |||||||||| ||| ||||||| || |  || | |||||||||| |||||||||||||| ||||||| |||||||    
T  24621648 agaggtgaaatctgttaaaagtgcagcaactttgatgataaaagctggtgtcaaacctaatgttgcttgttatca 24621574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 6326616 - 6326535
Alignment:
Q  156 aaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgctggttatcactc 237  Q
    |||||||||| ||| ||||||||| | ||   ||| | ||||||||||| ||| ||||||||| ||||||| ||||||||||    
T  6326616 aaagagaggtcaaatctgctaaaactgcagtagctgtgatgataaaaggcggtctcaaacctaatgttgctagttatcactc 6326535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 14508475 - 14508414
Alignment:
Q  469 gaaaataagaatggtgcagtggaacttgtttgtggtgtgtagtttacatgctttctagtttt 530  Q
    ||||| || |||||||||  ||||||||||||| | | ||||||||||||||||||| ||||    
T  14508475 gaaaacaacaatggtgcataggaacttgtttgttgagagtagtttacatgctttctattttt 14508414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 8e-60; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 36 - 457
Target Start/End: Original strand, 9066366 - 9066772
Alignment:
Q  36 tcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaatacatggatcc 135  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||| ||||||||||||| ||||||| |    
T  9066366 tcacatatcataatctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttagagaattagaggcattaaaatgcatggattc 9066465  T
Q  136 aagtgtttatgttcct---------actgaaagagaggtgaaagctgctaaaagtacaactgctcttatgataaaaggtggtgtcaaacctattgttgct 226  Q
    ||||||| ||||||||         |||||| ||| |  |||||||||||||||| |||    |||     |||| ||||||||| ||||||||||||||    
T  9066466 aagtgttaatgttcctactttagtaactgaaggagggtcgaaagctgctaaaagtgcaa----tct----gtaaacggtggtgtcgaacctattgttgct 9066557  T
Q  227 ggttatcactcggtgattggtgaaccatacaaaggagaaggacaaatcgataagattgcacaattggtggaaacattgtgatgttacaaattaaactttg 326  Q
    | ||||||||||||||||| | | | || ||||| |||||||||| | ||||||||||||||| ||||||||||||||  | ||||||    || ||  |    
T  9066558 gtttatcactcggtgattgatcacctattcaaagtagaaggacaagttgataagattgcacaaatggtggaaacattgcaacgttaca----aacctagg 9066653  T
Q  327 ccggtacaattcgactccgattaattatggttatgattataccaaagagactatttaatgtgggcttgttcaactaagaattgacctcatcgaaagacaa 426  Q
    || | ||||||| | ||||||||| |||||||||| |||||   || |||||||||||||||||||||||| || ||| ||           ||||||||    
T  9066654 ccagcacaattctattccgattaa-tatggttatggttataatgaacagactatttaatgtgggcttgttccacgaagcat-----------aaagacaa 9066741  T
Q  427 tggttgcagaccaattagtctctctttctct 457  Q
    |||||||||| |||||||||||||| |||||    
T  9066742 tggttgcagaacaattagtctctctctctct 9066772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 9068553 - 9068637
Alignment:
Q  40 atatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcattaaaa 124  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||| ||||||| |||| ||||    
T  9068553 atatcataatctaatctatggctattgcatcgttggtcaatttaaacaagttgttgccttgtttagagaattggaagcataaaaa 9068637  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 591 - 691
Target Start/End: Original strand, 9066903 - 9067004
Alignment:
Q  591 ataatgtttaatgtattctttaatcatgcttgtatttggctaatttatacccttcgaacaga-tggtatctatgtttcttattttttgctctttgattat 689  Q
    ||||||||||||| ||||||| |||||| |||||||||| | |||||| ||||| |||||||  | ||| |||||||||| |||||||||||||||||||    
T  9066903 ataatgtttaatgcattctttgatcatgtttgtatttggtttatttattccctttgaacagacagctatttatgtttcttgttttttgctctttgattat 9067002  T
Q  690 gc 691  Q
    ||    
T  9067003 gc 9067004  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 47924919 - 47924836
Alignment:
Q  36 tcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggaggcat 119  Q
    ||||||||||| |||||||| |||| ||||||||| | ||| ||||||||||||| ||||||||| ||||| ||||||| ||||    
T  47924919 tcacatatcattatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgccttgcttagagaattggatgcat 47924836  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 384703 - 384619
Alignment:
Q  31 tgttgtcacatatcataatctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttagaaaattggag 115  Q
    ||||||||||||||   ||||||||||||   ||||||||  | |||||||||||||||||||||||||||||| | ||||||||    
T  384703 tgttgtcacatatcggcatctaatctatgtccattgcatcactcgtcaatttaaacaagcaattgccttgtttaaagaattggag 384619  T

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