View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10308_low_10 (Length: 213)
Name: NF10308_low_10
Description: NF10308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10308_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 40489338 - 40489157
Alignment:
| Q |
15 |
cacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatg |
114 |
Q |
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| T |
40489338 |
cacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatg |
40489239 |
T |
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| Q |
115 |
gttgaatattttgatcttgattacgaatctttgtctctctgctccaacgtagacacaaagacaaccatgtggtgttttctta |
196 |
Q |
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| T |
40489238 |
gttgaatattttgatcttgattacgaatctttgtctctctggtccaacgtagacacaaagacaaccatgtggtgttttctta |
40489157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 40466356 - 40466173
Alignment:
| Q |
15 |
cacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatg |
114 |
Q |
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| T |
40466356 |
cacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatg |
40466257 |
T |
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| Q |
115 |
gttgaatattttgatcttgattacgaatctttgtctctctgctccaacgtagacacaaagacaaccatgtggtgttttcttagt |
198 |
Q |
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| T |
40466256 |
gttgaatattttgatcttgattacgaatctttgtctctctggtccaacgtagacacaaagacaaccatgtggtggcttcttagt |
40466173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 40472681 - 40472519
Alignment:
| Q |
26 |
tcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatattt |
125 |
Q |
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| T |
40472681 |
tcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaagagttttgaacaaaggatggttgaatattt |
40472582 |
T |
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| Q |
126 |
tgatcttgattacgaatctttgtctctctgctccaacgtagacacaaagacaaccatgtggtg |
188 |
Q |
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| T |
40472581 |
tgatcttgattatgaatctttgtctctctggtccaacgtagacacaaatataaccatgtggtg |
40472519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 40480456 - 40480377
Alignment:
| Q |
26 |
tcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaa |
105 |
Q |
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| T |
40480456 |
tcaacgtcacaaggaagccatagaggaccatcacttttatatccatattcattgtcaacatcttctaaaagagttttaaa |
40480377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 7624847 - 7624788
Alignment:
| Q |
75 |
cattctcaacatcttctaaaagagttttaaacaaaggatggttgaatattttgatcttga |
134 |
Q |
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| T |
7624847 |
cattctcaacagctcctaaaagagttttaaacaaagggtgattgaatattctgatcttga |
7624788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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