View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10308_low_7 (Length: 239)

Name: NF10308_low_7
Description: NF10308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10308_low_7
NF10308_low_7
[»] chr2 (19 HSPs)
chr2 (1-223)||(44615204-44615426)
chr2 (5-166)||(44624634-44624798)
chr2 (5-150)||(39138517-39138662)
chr2 (5-150)||(39152930-39153075)
chr2 (38-150)||(39472969-39473081)
chr2 (41-141)||(39216537-39216637)
chr2 (40-132)||(39396853-39396945)
chr2 (83-149)||(44895351-44895417)
chr2 (92-149)||(39604188-39604245)
chr2 (33-81)||(44749731-44749779)
chr2 (176-223)||(44749611-44749658)
chr2 (85-141)||(39196756-39196812)
chr2 (85-141)||(39223594-39223650)
chr2 (92-149)||(39099459-39099516)
chr2 (92-129)||(39144488-39144525)
chr2 (92-129)||(39493692-39493729)
chr2 (85-141)||(39205988-39206044)
chr2 (84-136)||(39387739-39387791)
chr2 (187-223)||(44895473-44895509)
[»] chr5 (2 HSPs)
chr5 (1-223)||(17060444-17060666)
chr5 (85-141)||(33562169-33562225)
[»] chr8 (1 HSPs)
chr8 (9-139)||(44950036-44950169)
[»] chr6 (1 HSPs)
chr6 (5-132)||(16114256-16114383)
[»] chr7 (1 HSPs)
chr7 (85-132)||(19808795-19808842)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44615426 - 44615204
Alignment:
Q  1 attatcatcagttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44615426 attatcatcagttgttctagcagatagatccagccttcatcaataatcaccgctttgtctcctttcttaggcagtggaatcgtagggtttagtattatat 44615327  T
Q  101 ccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatgccaatttcctcgcttgtgccatcaatggtaatactgaattggtcatccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615326 ccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatgccaatttcctcgcttgtgccatcaatggtaatactgaattggtcatccat 44615227  T
Q  201 gttagatgtatctgcatatttag 223  Q
    ||||||| |||||||||||||||    
T  44615226 gttagatatatctgcatatttag 44615204  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 44624798 - 44624634
Alignment:
Q  5 tcatcagttgttctagcagatagatccagc---cttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatc 101  Q
    ||||||||| ||||||||||||||| | ||   | |||||||||||||||||||||||||||||| |||| ||||| ||  | ||||| |||||||||||    
T  44624798 tcatcagtttttctagcagatagatgcggctttcatcatcaataatcacagctttgtctcctttcttaggaagtgggataatggggttcagtattatatc 44624699  T
Q  102 caaaacaagttttgctggatctgatgattctcgcaaattatctagaatgccaatttcctcgcttg 166  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  44624698 caaaacaatttttgctggatctgatgattctcgcaaattatcaagaatgtcaatttcctcacttg 44624634  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 39138662 - 39138517
Alignment:
Q  5 tcatcagttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaa 104  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||||| |  ||||| ||| ||  | |||||||  | || ||  |||||||||||||    
T  39138662 tcatcagttgttctagcagaaagatgcagccatcatcaataatcacagcatgttctccattcttacaccgtggaataattggcttctgtattatatccaa 39138563  T
Q  105 aacaagttttgctggatctgatgattctcgcaaattatctagaatg 150  Q
    ||||| |||||||||||||||||||||| ||| |||| ||||||||    
T  39138562 aacaacttttgctggatctgatgattcttgcagattaactagaatg 39138517  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 39153075 - 39152930
Alignment:
Q  5 tcatcagttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaa 104  Q
    |||||||||||||||||||| |||| ||||   |||| ||||||||||| | |||||| ||| ||  | |||||||  | |||||  |||||||||||||    
T  39153075 tcatcagttgttctagcagaaagatgcagctaccatctataatcacagcatggtctccgttcttataccgtggaataattgggttctgtattatatccaa 39152976  T
Q  105 aacaagttttgctggatctgatgattctcgcaaattatctagaatg 150  Q
     |||| |||||||||||||||||||||| |||  ||||||||||||    
T  39152975 cacaatttttgctggatctgatgattcttgcaggttatctagaatg 39152930  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 150
Target Start/End: Original strand, 39472969 - 39473081
Alignment:
Q  38 catcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaa 137  Q
    |||||||||||||||| | |||||| ||| ||  | |||||||  | ||||| ||||||||||||| ||||| |||||||||||||||||||||| |||     
T  39472969 catcaataatcacagcatggtctcccttcttacaccgtggaataatcgggttcagtattatatccagaacaaattttgctggatctgatgattcttgcag 39473068  T
Q  138 attatctagaatg 150  Q
    || | ||||||||    
T  39473069 atcaactagaatg 39473081  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 141
Target Start/End: Complemental strand, 39216637 - 39216537
Alignment:
Q  41 caataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatt 140  Q
    ||||||||||||| |||||||| ||| ||  || | |||| ||||||||  |||| ||||||||||||||| ||| |||||||||||| ||| |||||||    
T  39216637 caataatcacagcattgtctcccttcttacacaattgaatagtagggttctgtatcatatccaaaacaagtcttgatggatctgatgagtctagcaaatt 39216538  T
Q  141 a 141  Q
    |    
T  39216537 a 39216537  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 39396853 - 39396945
Alignment:
Q  40 tcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaaaacaagttttgctggatctgatgattct 132  Q
    ||||||| |||| | |||||||| ||| ||  |||||||||  | |||||| |||||||||||||||||||| ||| ||||||||||||||||    
T  39396853 tcaataaccacaccattgtctcccttcttacacagtggaataatggggttttgtattatatccaaaacaagtcttgatggatctgatgattct 39396945  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 44895351 - 44895417
Alignment:
Q  83 tagggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaat 149  Q
    |||||||  ||||||||||||||||||||||||| |||| |||||||||||||| | || |||||||    
T  44895351 tagggttctgtattatatccaaaacaagttttgcaggatttgatgattctcgcagagtaactagaat 44895417  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 39604245 - 39604188
Alignment:
Q  92 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaat 149  Q
    |||||||||||||||||| ||||| ||||||||||||| || ||| ||||||||||||    
T  39604245 gtattatatccaaaacaacttttgatggatctgatgatccttgcagattatctagaat 39604188  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 44749779 - 44749731
Alignment:
Q  33 gccttcatcaataatcacagctttgtctcctttcctaggcagtggaatc 81  Q
    ||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  44749779 gccttcatcaataatcacagctttgtcacccttcttaggcagtggaatc 44749731  T

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Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 44749611 - 44749658
Alignment:
Q  176 tggtaatactgaattggtcatccatgttagatgtatctgcatatttag 223  Q
    |||| |||||| |||| |||||||||||||||||||||||||||||||    
T  44749611 tggttatactgtattgatcatccatgttagatgtatctgcatatttag 44749658  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 39196756 - 39196812
Alignment:
Q  85 gggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 141  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||| ||| ||||    
T  39196756 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 39196812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 39223650 - 39223594
Alignment:
Q  85 gggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 141  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||| ||| ||||    
T  39223650 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 39223594  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 39099516 - 39099459
Alignment:
Q  92 gtattatatccaaaacaagttttgctggatctgatgattctcgcaaattatctagaat 149  Q
    |||||||||||||||| | ||||| |||||||||| || || ||| ||||||||||||    
T  39099516 gtattatatccaaaacgacttttgatggatctgataatccttgcagattatctagaat 39099459  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 39144525 - 39144488
Alignment:
Q  92 gtattatatccaaaacaagttttgctggatctgatgat 129  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  39144525 gtattatatccaaaacaacttttgatggatctgatgat 39144488  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 39493692 - 39493729
Alignment:
Q  92 gtattatatccaaaacaagttttgctggatctgatgat 129  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  39493692 gtattatatccaaaacaacttttgatggatctgatgat 39493729  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 39205988 - 39206044
Alignment:
Q  85 gggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 141  Q
    ||||| ||||| || |||||||||||||||| |||||||| ||||||| ||| ||||    
T  39205988 gggttcagtatcatttccaaaacaagttttgatggatctgctgattcttgcagatta 39206044  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 39387739 - 39387791
Alignment:
Q  84 agggtttagtattatatccaaaacaagttttgctggatctgatgattctcgca 136  Q
    |||||| | ||| ||||||||||||||||||| ||| || |||||||||||||    
T  39387739 agggttcaatatcatatccaaaacaagttttgatgggtccgatgattctcgca 39387791  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 44895473 - 44895509
Alignment:
Q  187 aattggtcatccatgttagatgtatctgcatatttag 223  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  44895473 aattgatcatccatgttagatgtaactgcatatttag 44895509  T

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Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17060666 - 17060444
Alignment:
Q  1 attatcatcagttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatat 100  Q
    |||||||||||||||||||||| | |||| | || |||||||||||||||| |||||||||| ||| |||| ||||||||  | ||||| | ||||| ||    
T  17060666 attatcatcagttgttctagcataaagatgcggctttcatcaataatcacaactttgtctcccttcttaggtagtggaataatggggttcattattacat 17060567  T
Q  101 ccaaaacaagttttgctggatctgatgattctcgcaaattatctagaatgccaatttcctcgcttgtgccatcaatggtaatactgaattggtcatccat 200  Q
    ||||||||| ||||| |||||| ||||||||| |||||||| |||||||| ||  |||||| ||||  ||||||||||||||||| ||||  ||||||||    
T  17060566 ccaaaacaatttttgatggatccgatgattcttgcaaattaactagaatgtcagattcctcacttgctccatcaatggtaatacttaattcatcatccat 17060467  T
Q  201 gttagatgtatctgcatatttag 223  Q
    || ||||||||||||||||||||    
T  17060466 gtaagatgtatctgcatatttag 17060444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 33562225 - 33562169
Alignment:
Q  85 gggtttagtattatatccaaaacaagttttgctggatctgatgattctcgcaaatta 141  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||| ||| ||||    
T  33562225 gggttcagtatcatttccaaaacaagttttgatggatctgatgattcttgcagatta 33562169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 44950036 - 44950169
Alignment:
Q  9 cagttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagg---gtttagtattatatccaaa 105  Q
    |||||||||||| |||||||  | || ||||||||||||||||||||||||||| ||| |||||| |||||   | ||   || ||||||||||||||||    
T  44950036 cagttgttctagaagatagacgcggctttcatcaataatcacagctttgtctcccttcttaggcaatggaaatatggggtcgtctagtattatatccaaa 44950135  T
Q  106 acaagttttgctggatctgatgattctcgcaaat 139  Q
    |||| ||| |||  ||||||||||||||||||||    
T  44950136 acaattttcgctatatctgatgattctcgcaaat 44950169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 16114383 - 16114256
Alignment:
Q  5 tcatcagttgttctagcagatagatccagccttcatcaataatcacagctttgtctcctttcctaggcagtggaatcgtagggtttagtattatatccaa 104  Q
    ||||||||| ||||| |||||||||   || |||||||||||||||||| |||||||| ||| ||  ||||||| |    |||||  |||||||||||||    
T  16114383 tcatcagttcttctaacagatagatgtggcattcatcaataatcacagcattgtctcccttcttacacagtggagtaccggggttctgtattatatccaa 16114284  T
Q  105 aacaagttttgctggatctgatgattct 132  Q
    ||||||| ||| |||||||| |||||||    
T  16114283 aacaagtcttgatggatctgctgattct 16114256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 19808842 - 19808795
Alignment:
Q  85 gggtttagtattatatccaaaacaagttttgctggatctgatgattct 132  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||||||    
T  19808842 gggttttgtattatatccaaaacaacttttgttggatctgatgattct 19808795  T

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