View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10308_low_8 (Length: 228)
Name: NF10308_low_8
Description: NF10308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10308_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 40580768 - 40580562
Alignment:
| Q |
3 |
tgagaaaaggaaaggagacaaaacttgcattctttgcaaagctgcttgtaagattttctgccctgcttactcgtcacccatggccaactccaaggcgtag |
102 |
Q |
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| T |
40580768 |
tgagaaaaggaaaggagacaaaacttgcattctttgcaaagctgcttgtaagattttctgcactgcttactcgtcacccatggccaactccaaggcgtag |
40580669 |
T |
|
| Q |
103 |
tcatctctttcctgtacatgatttgtgtgttagaaaggccacattatcaaagaaaacatgtcaacttcatttgcacnnnnnnntagtcatatataacaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40580668 |
tcatctctttcctgtacatgatttgtgtgttagaaaggccacattaccaaagaaaacatgtcaacttcatttgcacaaaaaaatagtcatatataacaga |
40580569 |
T |
|
| Q |
203 |
acctacc |
209 |
Q |
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||||||| |
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| T |
40580568 |
acctacc |
40580562 |
T |
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