View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10308_low_9 (Length: 216)
Name: NF10308_low_9
Description: NF10308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10308_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 7623655 - 7623456
Alignment:
| Q |
1 |
tttgtgctcttcacctttttagccctaaaagtctacattcttttaggcctattagagaaaatgaagtggctgaattgattcaaaagctgtcacagaatga |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7623655 |
tttgtgctcttcacctctttagccctaaaagtctacattcttttaggcctattagagaaaatgaagtggctgaattgattcaaaagctgtcacagtatga |
7623556 |
T |
|
| Q |
101 |
tggtgatgaaaaaggtgtaaacttgagtgaaatattgatatctttcacaaatgcaattatatgtaagatagcttttgggaaaaaatatgtttttgattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7623555 |
tggtgatgaaaaaggtgtaaacttgagtgaaatattgatatctttcacaaatgcaattatatgtaagatagcttttgggaaaaaatatgtttttgattat |
7623456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 36 - 200
Target Start/End: Complemental strand, 7629929 - 7629765
Alignment:
| Q |
36 |
cattcttttaggcctattagagaaaatgaagtggctgaattgattcaaaagctgtcacagaatgatggtgatgaaaaaggtgtaaacttgagtgaaatat |
135 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||| |||| || ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
7629929 |
cattcttttaggcccgttagagaaaatgaagtggcccaattgattcaaaagttgtcgcaatatggtggtgatgaaaaaggtgcgaacttgagtgaaatat |
7629830 |
T |
|
| Q |
136 |
tgatatctttcacaaatgcaattatatgtaagatagcttttgggaaaaaatatgtttttgattat |
200 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7629829 |
tgatgtctctcacaaatacaattatatgtaagatagcttttgggaaaacatatgtttgtgattat |
7629765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 36 - 200
Target Start/End: Complemental strand, 7636712 - 7636548
Alignment:
| Q |
36 |
cattcttttaggcctattagagaaaatgaagtggctgaattgattcaaaagctgtcacagaatgatggtgatgaaaaaggtgtaaacttgagtgaaatat |
135 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||| |||| || ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
7636712 |
cattcttttaggcccgttagagaaaatgaagtggcccaattgattcaaaagttgtcgcaatatggtggtgatgaaaaaggtgcgaacttgagtgaaatat |
7636613 |
T |
|
| Q |
136 |
tgatatctttcacaaatgcaattatatgtaagatagcttttgggaaaaaatatgtttttgattat |
200 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
7636612 |
tgatgtctctcacaaatacaattatatgtaagatagcttttggaaaaacatatgtttgtgattat |
7636548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University