View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10309_high_8 (Length: 235)
Name: NF10309_high_8
Description: NF10309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10309_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 42054709 - 42054810
Alignment:
| Q |
96 |
ataggataaattccctccaaattatcaagaggtaatgtagaaaaaacattatgatgaaagtattattcacatataatactaattatatttttcttttctt |
195 |
Q |
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| T |
42054709 |
ataggataaattccctccaaattatcaagaggtaatgtagaaaaaacattatgatcaaagtattattcacatataatactaattatatttttcttttctt |
42054808 |
T |
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| Q |
196 |
gt |
197 |
Q |
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|| |
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| T |
42054809 |
gt |
42054810 |
T |
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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42054614 - 42054677
Alignment:
| Q |
1 |
ttgaatgaaatagataaagaaatttgatgttttgaggatgaaaatggtatttgattgtaagaag |
64 |
Q |
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| T |
42054614 |
ttgaatgaaatagataaagaaattttatgttctgaagatgaaaatggtatttgattgtaagaag |
42054677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28282715 - 28282652
Alignment:
| Q |
1 |
ttgaatgaaatagataaagaaatttgatgttttgaggatgaaaatggtatttgattgtaagaag |
64 |
Q |
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| T |
28282715 |
ttgaatgaagcagataaagaagtttgatgttatggagatgaaaatggtattcgattgtaagaag |
28282652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10775082 - 10775019
Alignment:
| Q |
1 |
ttgaatgaaatagataaagaaatttgatgttttgaggatgaaaatggtatttgattgtaagaag |
64 |
Q |
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|||||||||| ||| ||||||||||||||| || |||||||||| ||||||||| ||||||| |
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| T |
10775082 |
ttgaatgaaacagacgaagaaatttgatgttctggagatgaaaatgatatttgattataagaag |
10775019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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