View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10309_low_2 (Length: 383)
Name: NF10309_low_2
Description: NF10309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10309_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 37844518 - 37844169
Alignment:
| Q |
19 |
ctttgatacatcaaacttatacaatatgttatagcctttgatgctaatgagacaagatagcaaagtaaagatgcatgactatatgaaaagtaagatacat |
118 |
Q |
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| T |
37844518 |
ctttgatacatcaaacttatacaatatgttatagcctttgatgctaatgagacaagatagcaaagtgaagatgcatgactatatgaaaagtaagatacat |
37844419 |
T |
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| Q |
119 |
gaattaggtccaaggtatagtacaatcaaaagccgatgattatttggtatacacttgctatttaaaatgttagtatacattatctagcagactagtatgg |
218 |
Q |
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| T |
37844418 |
gaattaggtccaaggtatagtacaatcaaaagccgatgattatttggtatacacttgctatttaaaatgttagtatacattatctagcagactagtatgg |
37844319 |
T |
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| Q |
219 |
attcttcaatttgaaatcgtgttcaagggctcgataggtgttgatgtctaacatcgacagaactttgatatatgtggttacatacaatcattttcacttt |
318 |
Q |
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| T |
37844318 |
attcttcaatttgaaatcgtgttcaagggctcgataggtgttgatgtctaacatcgacagaacttcgatacatgtggttacatacaatcattttcacttt |
37844219 |
T |
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| Q |
319 |
cttaaattatttcttgtgtttacatgtcggtattggtgcatgtatattgt |
368 |
Q |
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| T |
37844218 |
cttaaattatttcttgtgtttacatgtcggtatcggtgcatgtatattgt |
37844169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 16331029 - 16330969
Alignment:
| Q |
290 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtcggta |
350 |
Q |
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| T |
16331029 |
atgtggttacatttaatcattttcattttcttaaattattactagtgtctacatgtcggta |
16330969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 16567342 - 16567286
Alignment:
| Q |
290 |
atgtggttacatacaatcattttcactttcttaaattatttcttgtgtttacatgtc |
346 |
Q |
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|||||||||||| ||||||||| || |||||||||||||| | ||||| |||||||| |
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| T |
16567342 |
atgtggttacattcaatcatttccattttcttaaattattgcatgtgtctacatgtc |
16567286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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