View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10309_low_4 (Length: 338)
Name: NF10309_low_4
Description: NF10309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10309_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 32022423 - 32022119
Alignment:
| Q |
18 |
catctttctcaattctcatacatccaagagagaatcttctcaatgaaaaccataaagactatacaaaacttatgcaagctagactcactcgtgactcagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32022423 |
catctttctcaattctcatacatccaagagagaatcttctcaatgaaaaccataaagactatacaaaacttatgcaagctagactcactcgtgactcagc |
32022324 |
T |
|
| Q |
118 |
ccgagttgactcactaactacaaaactcaaactttctctaaacaacctcaagaaaaccgatctccacccggttcaaaccgagcttcaacaagaagatctc |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32022323 |
ccgagttgactcactaactacaaaactcgaactttctctaaacaacctcaagaaaaccgatctccacccggttcaaaccgagcttcaacaagaagatctc |
32022224 |
T |
|
| Q |
218 |
tccacaccagtttcctccggttctggctccggctccggtgagtatttctccagactaggcataggccaaccaccaaaaccctactacatggttcttgaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32022223 |
tccacaccagtttcctccggttctggctccggctccggtgagtatttctccagactaggcataggtcaaccaccaaaaccctactacatggttcttgaca |
32022124 |
T |
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| Q |
318 |
caggt |
322 |
Q |
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||||| |
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| T |
32022123 |
caggt |
32022119 |
T |
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