View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10309_low_9 (Length: 238)

Name: NF10309_low_9
Description: NF10309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10309_low_9
NF10309_low_9
[»] chr5 (10 HSPs)
chr5 (1-224)||(1163648-1163871)
chr5 (1-185)||(1849904-1850091)
chr5 (43-185)||(3299472-3299617)
chr5 (43-185)||(3392365-3392510)
chr5 (32-184)||(40418223-40418375)
chr5 (33-185)||(39879753-39879905)
chr5 (32-185)||(38987644-38987797)
chr5 (33-185)||(39726357-39726509)
chr5 (33-182)||(39399801-39399950)
chr5 (46-185)||(39168785-39168924)
[»] chr4 (2 HSPs)
chr4 (43-178)||(25912295-25912430)
chr4 (46-111)||(44444772-44444837)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1163648 - 1163871
Alignment:
Q  1 agcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163648 agcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctg 1163747  T
Q  101 atttgaaaagtgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcagtataagtagcaaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163748 atttgaaaagtgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcagtataagtagcaaaag 1163847  T
Q  201 catcaccatcttcatcatgttcat 224  Q
    ||||||||||||||||||||||||    
T  1163848 catcaccatcttcatcatgttcat 1163871  T

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Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 1850091 - 1849904
Alignment:
Q  1 agcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  1850091 agcaaaactaatcttggtaatcaaaatgggatctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctg 1849992  T
Q  101 atttgaaaa---gtgtgattattatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 185  Q
    |||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849991 atttgaaaagttgtgtgattattatttccaatatctttcacacgagcaactatggcattagctaaacgatattttttggcagcagcag 1849904  T

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Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 3299617 - 3299472
Alignment:
Q  43 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3299617 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3299518  T
Q  140 cgagcaactatggcattagctaaacgatattttttggcagcagcag 185  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  3299517 cgagcaaccatggcatcagctaaacgatattttttggcagcagcag 3299472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 43 - 185
Target Start/End: Complemental strand, 3392510 - 3392365
Alignment:
Q  43 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  3392510 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 3392411  T
Q  140 cgagcaactatggcattagctaaacgatattttttggcagcagcag 185  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  3392410 cgagcaaccatggcatcagctaaacgatattttttggcagcagcag 3392365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 40418375 - 40418223
Alignment:
Q  32 tctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaata 130  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  40418375 tctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaata 40418277  T
Q  131 tctttgacacgagcaactatggcattagctaaacgatattttttggcagcagca 184  Q
    ||||| ||||||||||| |  |||| |||||||| |||||||||||||||||||    
T  40418276 tctttcacacgagcaaccacagcatcagctaaacaatattttttggcagcagca 40418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 39879905 - 39879753
Alignment:
Q  33 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 131  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||    
T  39879905 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 39879807  T
Q  132 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 185  Q
    |||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  39879806 ctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 39879753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 38987797 - 38987644
Alignment:
Q  32 tctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaata 130  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||    
T  38987797 tctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagta 38987699  T
Q  131 tctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 185  Q
    ||||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  38987698 tctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 38987644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 185
Target Start/End: Complemental strand, 39726509 - 39726357
Alignment:
Q  33 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 131  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| |||    
T  39726509 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 39726411  T
Q  132 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcagcag 185  Q
    |||| ||||||||||| |  |||| ||||||||||||||||||||| |||||||    
T  39726410 ctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcag 39726357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 39399950 - 39399801
Alignment:
Q  33 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 131  Q
    ||||| ||| || ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||| ||    
T  39399950 ctcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaaaat 39399852  T
Q  132 ctttgacacgagcaactatggcattagctaaacgatattttttggcagcag 182  Q
     ||  ||||||||||| | ||||| ||||||||| |||||||| |||||||    
T  39399851 tttccacacgagcaaccacggcatcagctaaacggtattttttagcagcag 39399801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 39168924 - 39168785
Alignment:
Q  46 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacgagc 144  Q
    ||||||||||||||||| |||||||| |||||||||| |||| ||||||||  |||||||||||| |||| | ||||||||||| |||||  ||||||||    
T  39168924 gtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg-tcattatttccaaaatcttccacacgagc 39168826  T
Q  145 aactatggcattagctaaacgatattttttggcagcagcag 185  Q
    ||| | ||||| |||||| ||||||||||||||||||||||    
T  39168825 aaccacggcatcagctaaccgatattttttggcagcagcag 39168785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 25912295 - 25912430
Alignment:
Q  43 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatatctttgacacg 141  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  25912295 caggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg-tcattatttccaatatctttcacacg 25912393  T
Q  142 agcaactatggcattagctaaacgatattttttggca 178  Q
    |||||| |   ||| ||||||||||||||||||||||    
T  25912394 agcaaccacatcatcagctaaacgatattttttggca 25912430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 44444772 - 44444837
Alignment:
Q  46 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagt 111  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagt 44444837  T

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