View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_high_1 (Length: 604)
Name: NF1030_high_1
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 34 - 589
Target Start/End: Original strand, 38118495 - 38119050
Alignment:
| Q |
34 |
tcaccaccaacatctccaccacctccaccagcttgggacaatgttgagtcaagacatactcaaagccttgcaatcaaagctcaccaaaattacacaatca |
133 |
Q |
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| T |
38118495 |
tcaccaccaacatctccaccacctccaccagcttgggacaatgttgagtcaagacatactcaaagccttgcaatcaaagctcaccaaaattacacaatca |
38118594 |
T |
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| Q |
134 |
aacctccaacaacctcagatagagtcatagttttgctcaacacacaaaacactatagacaatgttcgtcattggtctgttaacaacgtatcatttttcct |
233 |
Q |
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| T |
38118595 |
aacctccaacaacctcagatagagtcatagttttgctcaacacacaaaacactatagacaatgttcgtcattggtctgttaacaacgtatcatttttcct |
38118694 |
T |
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| Q |
234 |
tcctcacaccccttatcttgttgcacttaaagagaatataactggtgaattcaaccaaacacctccacctgatggctatgattttaataattatgatatt |
333 |
Q |
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| T |
38118695 |
tcctcacaccccttatcttgttgcacttaaagagaatataactggtgaattcaaccaaacacctccacctgatggctatgattttaataattatgatatt |
38118794 |
T |
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| Q |
334 |
ttcagcgtggctaacaacacaaatgctacttctagcaatggaatttatagactgaagttcaatacaactgtggatattatacttcaaaatgcaaacacta |
433 |
Q |
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| T |
38118795 |
ttcagtgtggctaacaacacaaatgctacttctagcaatggaatttatagactgaagttcaatacaactgtggatattatacttcaaaatgcaaacacta |
38118894 |
T |
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| Q |
434 |
tgaataaaaataatagtgagacacatccttggcatcttcatggacatgatttttgggtacttggatatggaaagggaaagtttgatgcgaacaaagaccc |
533 |
Q |
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| T |
38118895 |
tgaataaaaataacagtgagacacatccttggcatcttcatggacatgatttttgggtacttggatatggaaagggaaagtttgatgcgaacaaagaccc |
38118994 |
T |
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| Q |
534 |
aaaaaattataatttggtgaaccccattatgaagaatactgtgccagtgcactcat |
589 |
Q |
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| T |
38118995 |
aaaaaattataatttggtgaaccccattatgaagaatactgtgccagtgcactcat |
38119050 |
T |
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