View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_low_1 (Length: 977)
Name: NF1030_low_1
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 842; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 29 - 963
Target Start/End: Complemental strand, 16010650 - 16009716
Alignment:
| Q |
29 |
aaaatgcacacaaatgtgatcaatggaaccacagttgcagttatgatgccattgccacaacttctaaaactgttataacgtggccgcaattgcagtttca |
128 |
Q |
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| T |
16010650 |
aaaatgcacacaaacgtgatcaatggaaccacagttgcagttatgatgccattgccacaacttctaaaactgttataacgtggccgcaattgcagtttca |
16010551 |
T |
|
| Q |
129 |
tattgcaatatagtattatggttataatattctgaaattactgttatatttctctgaattaggaagtggaagatgctatgagaatccgcacaaaagtgat |
228 |
Q |
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| T |
16010550 |
tattgcaatttagtattatggttatattattctgaaattact--tatatttctctgaattaggaagtggaagatgctatgagaatccgcacaaaagtgat |
16010453 |
T |
|
| Q |
229 |
taacctttttgaaagagcaagcctcccttctgtaccaatggaagagaagaaaaaacttcttagtttcgtaattgttggtggtggtccaactggagtagag |
328 |
Q |
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| T |
16010452 |
taacctttttgaaagagcaagcctcccttctgtaccaatggaagagaagaaaaaacttcttagtttcgtaattgttggtggtggtccaactggagtagag |
16010353 |
T |
|
| Q |
329 |
tttgctgcagagctacatgattttgtgcatgaagatctctctaaattatatccttctcttatagaccatgtcaagattactctccttgaggctggcgatc |
428 |
Q |
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| T |
16010352 |
tttgctgcagagctacatgattttgtgcatgaagatctctctaaattatatccttctcttatagaccatgtcaagattactctccttgaggctggcgatc |
16010253 |
T |
|
| Q |
429 |
atatcttaaacatgtaatgtatatttttt-cgctatattcggataata-ggtctatggctttaaattgtggttgcagtcatggttgtggagaaatatcgg |
526 |
Q |
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| T |
16010252 |
atatcttaaacatgtaatgtatatttttttcgctatattcgaataataaggtctatggctttaaattgtggttgcagtcacggttgtggagaaatatcgg |
16010153 |
T |
|
| Q |
527 |
caaatacagctgcaattgatgttacgattttctgagacctctgctctaaaacttttatattacaaatgcaattgtggttgcaaactgcaattccgaacaa |
626 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
16010152 |
caaatacagctgcaattgcggttacgattttctgagacctctgctctaaaacttttatattacaaatgcaactgtggttgcaaactgcaatttcgaacaa |
16010053 |
T |
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| Q |
627 |
cgtgaaggctattaaaatgaaatagcttggattattagagtgaagacaagcatgtgaaattaatgttaacgtatgattaacaatttcttgattcattata |
726 |
Q |
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| T |
16010052 |
cacgaaggctattaaaatgaaataacttggattattagagtgaagacaagcatgtgaagttaatgttaacatatgattaacaatttcttgattcattata |
16009953 |
T |
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| Q |
727 |
ggtttgacaagagaataacagaatttgctgaagagaagttcaaaagagatggaattgatgtgaaattgggatcaatggttgtgaaagttggtgaaaaaga |
826 |
Q |
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| T |
16009952 |
ggtttgacaagagaataacagaatttgctgaagaaaagttcaaaagagatggaattgatgtgaaattgggatcaatggttgtcaaagttggtgaaaaaga |
16009853 |
T |
|
| Q |
827 |
tatctcatccaaagaaagagaaagtggtcaagttgttactatgcctcatgggatggtagtttggtcaactggtattggtgctcgtcctgaaatactcgat |
926 |
Q |
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| T |
16009852 |
tatctcatccaaagaaagagaaagtggtcaggttgttactatgcctcatgggatggtagtttggtcaactggtattggtgctcgtcctgaaatactcgat |
16009753 |
T |
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| Q |
927 |
tttatgaaacaacttggccaggtttgtttatagtgtc |
963 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
16009752 |
tttatgaaacaacttggccaggtttgtttatagtgtc |
16009716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 725 - 791
Target Start/End: Original strand, 36127139 - 36127205
Alignment:
| Q |
725 |
taggtttgacaagagaataacagaatttgctgaagagaagttcaaaagagatggaattgatgtgaaa |
791 |
Q |
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| T |
36127139 |
taggtttgacaaaagaataacaacctttgctgaagacaagttcaaaagagatggtattgatgtgaaa |
36127205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 36126768 - 36126823
Alignment:
| Q |
299 |
attgttggtggtggtccaactggagtagagtttgctgcagagctacatgattttgt |
354 |
Q |
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|||||||| |||||||||||||||||||||||||| || | || ||||||||||| |
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| T |
36126768 |
attgttggaggtggtccaactggagtagagtttgcagccgcacttcatgattttgt |
36126823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 723 - 811
Target Start/End: Complemental strand, 2923876 - 2923788
Alignment:
| Q |
723 |
tataggtttgacaagagaataacagaatttgctgaagagaagttcaaaagagatggaattgatgtgaaattgggatcaatggttgtgaa |
811 |
Q |
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||||||||||| || || ||||||| ||||| ||||| ||||| |||||||||| |||||||||||| ||||| ||||||||||| |
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| T |
2923876 |
tataggtttgataaaaggataacagcttttgccgaagacaagtttcaaagagatgggattgatgtgaaaacaggatccatggttgtgaa |
2923788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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