View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1030_low_10 (Length: 251)
Name: NF1030_low_10
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 2357913 - 2357677
Alignment:
| Q |
1 |
aaacattatggtctgtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
2357913 |
aaacattatggtctgtttggattttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttacaattttcggtaaactcacg |
2357814 |
T |
|
| Q |
101 |
aggtgcagagagaggaccagctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttac |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2357813 |
aggtgcagagagaggaccaactggatataatc-------ttagggtttctttgattatcgcttgaaggtacaccaacttgtttatatccgactttgttac |
2357721 |
T |
|
| Q |
201 |
acatttatctcttccaacgtggaagtcaagttctgcctttgctt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2357720 |
acatttatctcttccaacgtggaagtcaagttctgcttttgctt |
2357677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 2340133 - 2340009
Alignment:
| Q |
12 |
tctgtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagaga |
111 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||||||||| ||||| || | ||||||||||| || ||||| || | || ||||| ||| | |||| |
|
|
| T |
2340133 |
tctgtttgaatcttccaaagatttgtgattaatcgagttccctttataacttgataaccacctaaattacaattctttgagaattcacgtggtccggaga |
2340034 |
T |
|
| Q |
112 |
gaggaccagctggatataatcttag |
136 |
Q |
| |
|
||||||| | |||||| |||||||| |
|
|
| T |
2340033 |
gaggacccggtggatacaatcttag |
2340009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 203
Target Start/End: Complemental strand, 2363208 - 2363033
Alignment:
| Q |
21 |
atcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggaccag |
120 |
Q |
| |
|
|||||||||||||| || |||| ||| ||||| ||| | |||||||| ||||||| || ||||| | | || |||||||| |||| | ||| |||| |
|
|
| T |
2363208 |
atcttccaaagattcaaaattaatcgtgttccatttcttacatcatatccacctaaattacaattctctgagaattcacgaggcacagataaagggccag |
2363109 |
T |
|
| Q |
121 |
ctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacaca |
203 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||||||||||||||| | |||||| |||||| ||||||| |
|
|
| T |
2363108 |
gtggatataatcttagt-------gtttctttgactatggcttgaaggtacaccaacttgtctatatctgactttcttacaca |
2363033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 4305909 - 4305700
Alignment:
| Q |
18 |
tggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccacctatgttgcaatttttggtaaactcacgaggtgcagagagaggac |
117 |
Q |
| |
|
||||||||||| ||||| | |||||||| |||||||||| |||||||||||||||||| || | || | || |||||||| ||| | |||||||| |
|
|
| T |
4305909 |
tggatcttccatagattcatgattagtctagttccttttttgacatcataaccacctaaatttgagttctctgtgaactcacgtggtcctgagagagggg |
4305810 |
T |
|
| Q |
118 |
cagctggatataatcttagccattagggtttctttgattatcacttgaaggtacaccaacttatttatatccgactttgttacacatttatctcttccaa |
217 |
Q |
| |
|
| | |||| |||| ||||| ||||||||||| |||| |||||||||| |||||||| | ||||||||||| | ||||||| | ||| | |||| |
|
|
| T |
4305809 |
cgggtggacataaccttag-------ggtttctttgactatcgcttgaaggtataccaacttgtctatatccgactcttttacacacctctctttgccaa |
4305717 |
T |
|
| Q |
218 |
cgtggaagtcaagttct |
234 |
Q |
| |
|
| |||| |||||||||| |
|
|
| T |
4305716 |
cttggatgtcaagttct |
4305700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 5804351 - 5804414
Alignment:
| Q |
12 |
tctgtttggatcttccaaagatttaagattagtcgagttccttttatgacatcataaccaccta |
75 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
5804351 |
tctgtttggatcttccaaagatttgtgattaatcgagttccttttgtaacatgataaccaccta |
5804414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University