View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_low_11 (Length: 249)
Name: NF1030_low_11
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 50101989 - 50102230
Alignment:
| Q |
1 |
agtcgtttgattcatgtagctaattccaccagtgggattagacttggttgctgttgttgttgtaacaattaaatacattgtcgattcagatttcgatgag |
100 |
Q |
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| T |
50101989 |
agtcgtttgattcatgtagctaaacccaccagtgggattagacttggttgctgttgttgttgtaacaattaaatacattgtcgattcagatttagatgag |
50102088 |
T |
|
| Q |
101 |
cttgatatgattaaagactatcaaaaatatatgttttatgattgctctgtctgtagtaaatggcctgggaaaaagcactggagggtaaccattactatgt |
200 |
Q |
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| T |
50102089 |
cttgatatgattaaagaccatcaaaaatatatgttttatgattgctctgtctgtagtaaatggcctgggaaaaagcactggagggtaaccattactatgt |
50102188 |
T |
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| Q |
201 |
tgatctaattgtttcttgggttatgtttttcatttcagtata |
242 |
Q |
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| T |
50102189 |
tgatctaattgtttcttgggttatgtttttcatttcagtata |
50102230 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 26299324 - 26299357
Alignment:
| Q |
31 |
agtgggattagacttggttgctgttgttgttgta |
64 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
26299324 |
agtgggataagacttggttgctgttgttgttgta |
26299357 |
T |
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