View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_low_13 (Length: 236)
Name: NF1030_low_13
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_13 |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 37193285 - 37193406
Alignment:
| Q |
18 |
gaaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcg |
117 |
Q |
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| T |
37193285 |
gaaactcatgaaaccacggtgaaaaatcacagtgggcaaaaagctacaccaactagcttctcaaaaccgcggtgagattggctttgaacgtgcagtagcg |
37193384 |
T |
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| Q |
118 |
gtcactcaccgcacaaacaaac |
139 |
Q |
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| T |
37193385 |
atcactcaccgcacaaacaaac |
37193406 |
T |
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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 37182182 - 37182274
Alignment:
| Q |
47 |
cagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaaacaaac |
139 |
Q |
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| T |
37182182 |
cagtgggcaaaaagctacaccaactagcttctcaaaaccgcggtgagattggctttgaacgtgcagtagcgatcactcaccgcacaaacaaac |
37182274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 29461262 - 29461186
Alignment:
| Q |
57 |
aaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaa |
133 |
Q |
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| T |
29461262 |
aaagctacaccaactagcttctcaataccatggtaagatagactctaaacgtgcggtagcggtcactcaccgcacaa |
29461186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 21105380 - 21105500
Alignment:
| Q |
19 |
aaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcgg |
118 |
Q |
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| T |
21105380 |
aaactaacaaaaccatggtgaaaaggcacggttggcgtaaagctacaccaactagcttctaaataccacggtgagattgactttaaacatgcagtagcgg |
21105479 |
T |
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| Q |
119 |
tcactcaccgcacaaacaaac |
139 |
Q |
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| T |
21105480 |
tcactcacggcacaaacaaac |
21105500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 42036775 - 42036841
Alignment:
| Q |
73 |
gcttctcaaaaccacggtgagattggctttgaacgtgcattagcggtcactcaccgcacaaacaaac |
139 |
Q |
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| T |
42036775 |
gcttctcaaaaccacggtgatattgactttgaatgtgcattagcggtcactcaccgcacaaataaac |
42036841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0495 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 10836 - 10718
Alignment:
| Q |
19 |
aaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcgg |
118 |
Q |
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|||||||||||||||||||||||| || || |||||||||| || | ||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
10836 |
aaactcacaaaaccatggtgaaaatacatgttatgcaaaaagctgcaacaactagcttctcaaaaccacgtttagattggctttgaacgtgtggtagcgg |
10737 |
T |
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| Q |
119 |
tcactcaccgcacaaacaa |
137 |
Q |
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| T |
10736 |
tcactcaccgtacaaacaa |
10718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 10234108 - 10233990
Alignment:
| Q |
19 |
aaactcacaaaaccatggtgaaaaggcacagtaggcaaaaagctacataagctagcttctcaaaaccacggtgagattggctttgaacgtgcattagcgg |
118 |
Q |
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|||||||||||||||||||||||| || || |||||||||| || | ||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
10234108 |
aaactcacaaaaccatggtgaaaatacatgttatgcaaaaagctgcaacaactagcttctcaaaaccacgtttagattggctttgaacgtgtggtagcgg |
10234009 |
T |
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| Q |
119 |
tcactcaccgcacaaacaa |
137 |
Q |
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|||||||||| |||||||| |
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| T |
10234008 |
tcactcaccgtacaaacaa |
10233990 |
T |
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