View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1030_low_15 (Length: 223)

Name: NF1030_low_15
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1030_low_15
NF1030_low_15
[»] chr1 (3 HSPs)
chr1 (15-99)||(31131289-31131373)
chr1 (17-99)||(31126583-31126665)
chr1 (17-99)||(31077265-31077347)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 31131289 - 31131373
Alignment:
Q  15 cagccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgcccctt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31131289 cagccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgcccctt 31131373  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 31126583 - 31126665
Alignment:
Q  17 gccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgcccctt 99  Q
    |||||||||||||||| ||||||||||||  |||| || |||||||| || ||||||||||||||  || |||||||| ||||    
T  31126583 gccaacttccaccgccgcatacaatggatagctgatattctccaaaccatcccttcctccaccttcatcttccaccgcgcctt 31126665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 31077265 - 31077347
Alignment:
Q  17 gccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgcccctt 99  Q
    ||||||||||||||||   | || ||||| || |||||||||||||| || ||||| ||||||||  ||||||||||| ||||    
T  31077265 gccaacttccaccgccgtgtccactggatctccgacatcctccaaaccatcccttcttccaccttcatcctccaccgctcctt 31077347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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