View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_low_3 (Length: 358)
Name: NF1030_low_3
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 41962469 - 41962790
Alignment:
| Q |
8 |
caccacagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacggcgacgtttccttaactcaacccaccactttctccaccggt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
41962469 |
caccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcagcccaccactttctccaccggt |
41962568 |
T |
|
| Q |
108 |
gctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962569 |
gctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatc |
41962668 |
T |
|
| Q |
208 |
ccacttcctttggtgatggcattgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctacaaattttattgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962669 |
ccacttcctttggtgatggcattgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctacaaattttattgc |
41962768 |
T |
|
| Q |
308 |
cgttgaattcgatacgcgattc |
329 |
Q |
| |
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||||||||||||||||||||| |
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| T |
41962769 |
tgttgaattcgatacgcgattc |
41962790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 1223943 - 1224264
Alignment:
| Q |
8 |
caccacagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacggcgacgtttccttaactcaacccaccactttctccaccggt |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1223943 |
caccgcagacaccgccaccaacctcaccttcctcggcgattcatctctaaccaccaacggcgtcgtttccttaactcaacccaccactttctccaccggt |
1224042 |
T |
|
| Q |
108 |
gctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1224043 |
gctatcatctacaaacaccccatttctctctttgacatttcaacaaacaccacgtcttcattctcaacaacgttctctttctctattacaaattcaaatc |
1224142 |
T |
|
| Q |
208 |
ccacttcctttggtgatggcattgctttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctacaaattttattgc |
307 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1224143 |
ccacttcctttggtgatggcattgttttcttcctttcccccaacaatctctcatcaacatcgtcaccaagcccatttggtcttcctacaaattttattgc |
1224242 |
T |
|
| Q |
308 |
cgttgaattcgatacgcgattc |
329 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
1224243 |
tgttgaattcgatacgcgattc |
1224264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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