View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_low_4 (Length: 344)
Name: NF1030_low_4
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 44946524 - 44946827
Alignment:
| Q |
11 |
cacagaacgatgaacacataagtagatgataaagtaagtttcatggtatttccatatttttctactgaaacatttgaatttgcttctacatgcaaacttt |
110 |
Q |
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| T |
44946524 |
cacagaacgatgaacacataagtagatgataaagtaagtttcatggtatttccatatttttctactgaaacatttgaatttgcttctacatgcaaacttt |
44946623 |
T |
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| Q |
111 |
tcaatctgcattgtaacactttggaatgaactatcagtcttttttatgacaagttcaacacattgatgattgattaatgatcttcgatgagaaaaaggtt |
210 |
Q |
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| T |
44946624 |
tcaatctgcattgtaacactttggaatgaactatcagtcttttttatgacaagttcaacac-------attgattaatgatcttcgatgagaaaaaggtt |
44946716 |
T |
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| Q |
211 |
ttgtatagcaagttctagcttgcatgattttctgtattctaatcctgaaattcatggtttaattttttcttttgcaatgtacaaaatgtgatgtgatgtg |
310 |
Q |
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| T |
44946717 |
ttgtatagcaggttctagcttgcatgattttctgtattctaatcctgaaattcatggtttaattttttcttttgcaatgtacaaaatgtgatgtgatgtg |
44946816 |
T |
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| Q |
311 |
ataggtgatga |
321 |
Q |
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| T |
44946817 |
ataggtgatga |
44946827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 311
Target Start/End: Complemental strand, 11452103 - 11451843
Alignment:
| Q |
49 |
tttcatggtatttccatatttttctactgaaacatttgaatttgcttctacatgcaaacttttcaatctgcattgtaacactttggaatgaactatcagt |
148 |
Q |
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| T |
11452103 |
tttcatggtatttccatgtttttctactaaaacatttgaatttgcttctata--cacacttttta-tctgtgttgtaactctttggaatgaactatcagt |
11452007 |
T |
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| Q |
149 |
ct---tttttatgacaagttcaacacattgatgattgattaatgatcttcgatgagaaaaaggttttgtatagcaagttct-------agcttgcatgat |
238 |
Q |
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| T |
11452006 |
gtctttttttctgacaagttcaacatactgat-------taatgatcttctatctaaaaaaggttgtgtataataagctctgatggttagcttgcatgat |
11451914 |
T |
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| Q |
239 |
tttctgtattctaatcctgaaattcatggtttaattttttcttttgcaatgtacaaaatgtgatgtgatgtga |
311 |
Q |
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| T |
11451913 |
tttctgta--ctaattctgaaattcatgttttaattttttcttctgctatgtacaaaatgtgatgtgatgtga |
11451843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 51568547 - 51568622
Alignment:
| Q |
23 |
aacacataagtagatgataaagtaagtttcatggtatttccatatttttctactgaaacatttgaatttgcttcta |
98 |
Q |
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| T |
51568547 |
aacacagaagtagatgataaagtaagtttcatgacatttccatatttttttgctgaaacatttgaattttcttcta |
51568622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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