View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_low_7 (Length: 283)
Name: NF1030_low_7
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 283
Target Start/End: Complemental strand, 9817530 - 9817277
Alignment:
| Q |
30 |
atagtctaatcaaattgtttgacatgttgctaagcaacctgatatatactcagtttcacagcttaaaaaagcaagtacagtttgtttatgggtacaccat |
129 |
Q |
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| T |
9817530 |
atagtctaatcaaattgtttgacatgttgctaagcaacctgatatatactcagtttcacagcttaaaaaagcaagtacagtttgtttatgggtacaccat |
9817431 |
T |
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| Q |
130 |
gatattggaacattaaaaaacgtaaacaagtatcaataagtgatttttctgtattgtttatctttacaccagaaaaagctacaagtttcatattggtttc |
229 |
Q |
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| T |
9817430 |
gatattggaacattaaaaaacgtaaacaagtatcaataagtgatttttctgtattgtttatctttacaccagaaaaagctacaagtttcatattggtttc |
9817331 |
T |
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| Q |
230 |
agtttcatttgcagggaacaatatgtcataatctagagttcctttgaagtatct |
283 |
Q |
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| T |
9817330 |
agtttcatttgcagggaacaatatgtcataatctagagttcctttgaagtatct |
9817277 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 33369731 - 33369824
Alignment:
| Q |
34 |
tctaatcaaattgtttgacatgttgctaagcaacctgatatatactcagtttcacagcttaaaaaagcaagtacagtttgtttatgggtacacc |
127 |
Q |
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| T |
33369731 |
tctaatcaaattgcttaacatgttgcaaatccacctgatatatactcagattcccaggttgaaaaagcaactcaagtttgtttcttggtacacc |
33369824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 6240290 - 6240234
Alignment:
| Q |
121 |
gtacaccatgatattggaacattaaaaaacgtaaacaagtatcaataagtgattttt |
177 |
Q |
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| T |
6240290 |
gtacaccatgatattggagcattcataaacttaaacaagtacccataagtgattttt |
6240234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 15490228 - 15490268
Alignment:
| Q |
236 |
atttgcagggaacaatatgtcataatctagagttcctttga |
276 |
Q |
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| T |
15490228 |
atttgcaggaaacaatatgacataatctagagttcccttga |
15490268 |
T |
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