View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_low_8 (Length: 258)
Name: NF1030_low_8
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 17750779 - 17750910
Alignment:
| Q |
116 |
atataatttatacgatattaacctcatt-accttcataatcttctacacgtaacgtttaattaacatttaaaccaacaaatgagaatttaccctaatgtt |
214 |
Q |
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| T |
17750779 |
atatagtttatacgatattaacctcatttaccctcataatcttctacacgtaacgtttaattaacatttgaaccaacaaatcagaatttaccctaatgtt |
17750878 |
T |
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| Q |
215 |
tatttatgtcacgttaatatttagtttatatt |
246 |
Q |
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| T |
17750879 |
tatttatgtcacgttaatatttagcttatatt |
17750910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 17759766 - 17759897
Alignment:
| Q |
116 |
atataatttatacgatattaacctcatt-accttcataatcttctacacgtaacgtttaattaacatttaaaccaacaaatgagaatttaccctaatgtt |
214 |
Q |
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||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
17759766 |
atatagtttatacgatattaacctcatttaccctcataatcttctacacgtaacgtttaattaacatttgaaccaacaaatcagaatttaccctaatgtt |
17759865 |
T |
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| Q |
215 |
tatttatgtcacgttaatatttagtttatatt |
246 |
Q |
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| T |
17759866 |
tatttatgtcacgttaatatttagcttatatt |
17759897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 17750666 - 17750715
Alignment:
| Q |
3 |
tctctctcgagctcctcttgaaacgaaacgatgaacaactccattatcgg |
52 |
Q |
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| T |
17750666 |
tctctctcgagctcctcttcaaacgaaacgatgaacaactccattatcgg |
17750715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 17759653 - 17759702
Alignment:
| Q |
3 |
tctctctcgagctcctcttgaaacgaaacgatgaacaactccattatcgg |
52 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17759653 |
tctctctcgagctcctcttcaaacgaaacgatgaacaactccattatcgg |
17759702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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