View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1030_low_9 (Length: 251)
Name: NF1030_low_9
Description: NF1030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1030_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 9817165 - 9816924
Alignment:
| Q |
1 |
acaatgtaggatcaactagctcgtaatcttcattattcacaagtttcagttttacttccgttgaagtatagggagaattgaaattcattatattgaatct |
100 |
Q |
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| T |
9817165 |
acaatgtaggatcaactagctcgtaatctttattattcacaagtttcagttttacttccgttgaagtatagggagaattgaaattcattatattgaatct |
9817066 |
T |
|
| Q |
101 |
cttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaacttcccaaacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9817065 |
cttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttcccaaacca |
9816966 |
T |
|
| Q |
201 |
gtcatgtcaaactctttcatcatttgtcttttgaattcatct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9816965 |
gtcatgtcaaactctttcatcatttgtcttttgaattcatct |
9816924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 16944109 - 16944226
Alignment:
| Q |
121 |
atttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaacttcccaaaccagtcatgtcaaactctttcat |
220 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||| |||||||| ||||||||| || |||||||| |
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| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
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| Q |
221 |
catttgtcttttgaattc |
238 |
Q |
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| T |
16944209 |
catttgtcttttgaattc |
16944226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 17014774 - 17014891
Alignment:
| Q |
121 |
atttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaacttcccaaaccagtcatgtcaaactctttcat |
220 |
Q |
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| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
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| Q |
221 |
catttgtcttttgaattc |
238 |
Q |
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|||||||||||||||||| |
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| T |
17014874 |
catttgtcttttgaattc |
17014891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 1831851 - 1831616
Alignment:
| Q |
2 |
caatgtaggatcaactagctcgtaatcttcattattcacaagtttcagttttacttccgttgaagtatagggagaattgaaattcattatattgaatctc |
101 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||| || ||||| || || || ||||| | || ||| | | || |||||| ||| || ||||||||| |
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| T |
1831851 |
caatgtagggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctc |
1831752 |
T |
|
| Q |
102 |
ttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaacttcccaaaccag |
201 |
Q |
| |
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|| ||||||| | | ||||||||||||| |||||||||||| | | ||| |||||||||||||| |||||| |||||||||||| |||||||| ||| |
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| T |
1831751 |
tttaaaatatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcag |
1831652 |
T |
|
| Q |
202 |
tcatgtcaaactctttcatcatttgtcttttgaatt |
237 |
Q |
| |
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|||| ||||| ||| ||||||||||||||||||||| |
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|
| T |
1831651 |
tcatctcaaattctgtcatcatttgtcttttgaatt |
1831616 |
T |
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