View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10310_high_4 (Length: 262)
Name: NF10310_high_4
Description: NF10310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10310_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 31167895 - 31167722
Alignment:
| Q |
63 |
aagtgcttaattaagttgtttgtccaaacagagtcttggtctgtatcctgcttgacatgatattttttaaagatgttacttttttgtgaagtatctatat |
162 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31167895 |
aagtgcttaattaagttgtttatccaaacagagtcttggtctgtatcctgcttgacatgattttttttaaagatgttacttttttgtgaagtatctatat |
31167796 |
T |
|
| Q |
163 |
taccatatacctttacatcaaagtcacactgcccttactgcttgagctatttgatcatatggcatgatatatgt |
236 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
31167795 |
taccatatacccttacatcacagtcacactacccttactgcttgagctatatgatcaaatggcatgctatatgt |
31167722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 6772697 - 6772885
Alignment:
| Q |
63 |
aagtgcttaattaagttgtttgtccaaacagagtcttggtctgtatcctgcttgacatgatattttttaaagatgttacttttttgtgaagtatctatat |
162 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
6772697 |
aagtgcttaattaagttgtttatccaaacagagtcttggtctgtatcctgtttgacacgattttttataaagatgttacttgtttgtgaagtatctatat |
6772796 |
T |
|
| Q |
163 |
taccatatacctttacatcaaagtcacactgcccttactgcttgagctatttgatcatatggcatgatatatgtgattatttgattcat |
251 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
6772797 |
taccatatacccttacatcacagtcacactacccttactgcttgagctatatgatcaaatggcatgctatatgtgattatttgattcat |
6772885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 251
Target Start/End: Original strand, 6768571 - 6768772
Alignment:
| Q |
51 |
acaaaatacagcaagtgcttaattaagttgtttgtccaaacagagtcttggtctgtatcctgcttgacatgatattttttaaagatgttactttt--ttg |
148 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| || | |
|
|
| T |
6768571 |
acaaaatacaacaagtgcttaattaagttgtttgtccaaacagagtcttggtctgtatcctgcttgacatgataatttttaaagaagttactcttactgc |
6768670 |
T |
|
| Q |
149 |
tgaagtatctatattaccatatacctttacatcaaagtcacactgcccttactgcttgagctatttgatcatatggcatgatatatgtgattatttgatt |
248 |
Q |
| |
|
| || || | ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
6768671 |
ttaatta-agaagttaccatatacctatacatcaaagtcacactacccttactgcttgagctatttgatcatatggcatgctatatctgattatttgatt |
6768769 |
T |
|
| Q |
249 |
cat |
251 |
Q |
| |
|
||| |
|
|
| T |
6768770 |
cat |
6768772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 31691272 - 31691306
Alignment:
| Q |
63 |
aagtgcttaattaagttgtttgtccaaacagagtc |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31691272 |
aagtgcttaattaagttgtttatccaaacagagtc |
31691306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 97
Target Start/End: Original strand, 6933119 - 6933153
Alignment:
| Q |
63 |
aagtgcttaattaagttgtttgtccaaacagagtc |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6933119 |
aagtgcttaattaagttgtttatccaaacagagtc |
6933153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University