View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10310_low_1 (Length: 532)
Name: NF10310_low_1
Description: NF10310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10310_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Original strand, 45440438 - 45440955
Alignment:
| Q |
1 |
ttgccgctacactatgcaacaaagctttgcatcaatggaagccaaacatatgcaaaacgcctggtaaccagtcaaaggatatctgcagattgacagagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45440438 |
ttgccgctacactatgcaacaaagctttgcatcaatggaagccaaacatatgcaaaacgcctggtaaccagtcaaaggatatctgcagattgacagagga |
45440537 |
T |
|
| Q |
101 |
aatggtactagctatgaaaccccgcatcgtcaaaaaacattaaggtcaataaaacaagaaaattttgaattgatacctgtagtccataacaaaattagat |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45440538 |
aatggtactagctatgaaaccccgcatcctcaaaaaacattaaggtcaataaaacaagaaaattttgaattgatacctgtagtccataacaaaattagat |
45440637 |
T |
|
| Q |
201 |
tttcctaccctccctagctgcaggattgtctgcttcccattctcctaatcatagcaaacacaaataagctaagtagagaacataactaactgcgttatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
45440638 |
tttcctaccctccctagctgcaggattgtctgcttcccattctcctaatcatagcaaacacaaatcagctaagtagacaacataactaactgcgttatta |
45440737 |
T |
|
| Q |
301 |
taacataaaaaacactcccggcttcaatgatgatacctctaaagtgagctgaaagtttttcacggatctctggattccaagtcctggccttcctttatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45440738 |
taacataaaaaacactcccggcttcaatgatgatacctctaaagtgagctgaaagtttttcacggatctctggattccaagtcctggccttcctttatct |
45440837 |
T |
|
| Q |
401 |
ctatagtcaagctcaaattgctttgtactcttgatgaaggaagacaataaaaatgaatgaaaatcaatatccatggctagtt----ataaatgacaaaga |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| |
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| T |
45440838 |
ctatagtcaagctcaaattgctttgtactcttgatgaaggaagacaataaaaattaatgaaaatcaatatccatggctagctataaataaatgacaaaga |
45440937 |
T |
|
| Q |
497 |
aacttcccctcagtgagg |
514 |
Q |
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|||||||||||||||||| |
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| T |
45440938 |
aacttcccctcagtgagg |
45440955 |
T |
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