View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10310_low_6 (Length: 251)
Name: NF10310_low_6
Description: NF10310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10310_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 29589512 - 29589274
Alignment:
| Q |
13 |
acaatgcacaagttatgaacgatgcgaataactcagcagtcaccgagcaagaaaatacaaaggacttaaggaggaatgaagagactggtgcatcaggagc |
112 |
Q |
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| T |
29589512 |
acaatgcacaagttatgaacgatgcgaataactcagcagtcaccgagcaagaaaatacaaaggacttaaggaggaatgaagagactggtgcatcaggagc |
29589413 |
T |
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| Q |
113 |
gcggcaagaagtggttgatgaagtctcaactatcacaagttcatcgtcatcgtcttcatcatcaccaaggtctgtattgccaataccacataagacagaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29589412 |
gcggcaagaagtggttgatgaagtctcaactatcacaagttcatcgtcatcatcttcatcatcaccaaggtctgtattgccaataccacataagacagaa |
29589313 |
T |
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| Q |
213 |
gcagaccaagagataaacctaggtgttcaacaatctgac |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29589312 |
gcagaccaagagataaacctaggtgttcaacaatctgac |
29589274 |
T |
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