View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10311_high_2 (Length: 463)
Name: NF10311_high_2
Description: NF10311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10311_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 446
Target Start/End: Complemental strand, 1366319 - 1365887
Alignment:
| Q |
12 |
atgaaagaagaaagaaattattatttttaattagagttgaattatctctcaaatgaacctaattaaaaatcaaatccgagttctttttatgagagagaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
1366319 |
atgaaagaagaaagaaattattatttttaattagggttgaattatctctcaaatgaagctaattaaaaatcaaatccaagttctttttatgtgagagaat |
1366220 |
T |
|
| Q |
112 |
catgttgtcaaactctctcaacaccatgttgatatttcacatgttaatttaatcactaagtagttggttttaatattcctaaaatgctaagtgtatgtta |
211 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1366219 |
catgt-gttaaactctctcaacaccatgttgatatttcacatgttaatttaatcactaagtagttggttttaatattcgtaaaatgctaagtgtatgtta |
1366121 |
T |
|
| Q |
212 |
catttttctgaaaatggtaagcacattttagattcacaatgaattacgcgaaattataatataattttccctgtttttgaactccgaagtatagttttca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1366120 |
catttttctgaaaatggtaagcacattttagattcacaatgaattacgcgaaattataatataattttccctgtttttgaactccgaagtatagttttca |
1366021 |
T |
|
| Q |
312 |
ttgaaattagggtgcctataatttagataaactcatagttcaatgaaaagtatgcaaaaaacacttacaagaatgaatcccaaatgcatggcagtgtcat |
411 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1366020 |
ttgaaatcagggtgcctataatttagataaactcatagttcaatgaaaaatatgc-aaaaactcttacaagaatgaatcccaaatgcatggcagtgtcat |
1365922 |
T |
|
| Q |
412 |
gannnnnnnattttgctaatctatatgccactaat |
446 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
1365921 |
gatttttttattttgctaatctatatgccactaat |
1365887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University