View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10311_low_11 (Length: 242)

Name: NF10311_low_11
Description: NF10311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10311_low_11
NF10311_low_11
[»] chr8 (3 HSPs)
chr8 (1-240)||(1846486-1846725)
chr8 (118-159)||(4297560-4297601)
chr8 (118-171)||(4619755-4619808)
[»] chr1 (16 HSPs)
chr1 (1-240)||(7890996-7891235)
chr1 (1-208)||(7888731-7888938)
chr1 (118-240)||(38138021-38138143)
chr1 (118-240)||(3300731-3300853)
chr1 (118-208)||(45983863-45983953)
chr1 (118-240)||(43044997-43045119)
chr1 (118-240)||(43066872-43066994)
chr1 (118-240)||(43083841-43083963)
chr1 (118-169)||(50912450-50912501)
chr1 (16-119)||(43045209-43045312)
chr1 (16-119)||(43045662-43045765)
chr1 (16-119)||(43066642-43066745)
chr1 (16-119)||(43084090-43084193)
chr1 (1-119)||(38137812-38137930)
chr1 (45-119)||(40034688-40034762)
chr1 (118-171)||(40034854-40034907)
[»] chr2 (4 HSPs)
chr2 (118-171)||(34690912-34690965)
chr2 (118-171)||(34713324-34713377)
chr2 (15-110)||(33861060-33861155)
chr2 (118-171)||(16232253-16232306)
[»] chr4 (1 HSPs)
chr4 (16-119)||(4231682-4231785)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1846725 - 1846486
Alignment:
Q  1 tcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846725 tcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaat 1846626  T
Q  101 gatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846625 gatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggtt 1846526  T
Q  201 ggctataacccaggtaaaattccttttatccctatctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1846525 ggctataacccaggtaaaattccttttatccctatctctg 1846486  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 4297601 - 4297560
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatg 159  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  4297601 agatggatgccactacacccaaatactccatggataggtatg 4297560  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 4619808 - 4619755
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 171  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||    
T  4619808 agatggatgccactgcacccaaatactccaagtataggtatgaagaatttgtga 4619755  T

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Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7890996 - 7891235
Alignment:
Q  1 tcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaat 100  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||    
T  7890996 tcattgattctacacttggtggttttgacgctggtttttgtaagaatggtcagaccactgaacatgttcaacttgcattcgctcttggtgtttcacaaat 7891095  T
Q  101 gatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggtt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7891096 gatctgctgttgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagtgaggtt 7891195  T
Q  201 ggctataacccaggtaaaattccttttatccctatctctg 240  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  7891196 ggctataacctaggtaaaattccttttatccctatctctg 7891235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 7888731 - 7888938
Alignment:
Q  1 tcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaat 100  Q
    ||||||| || ||| |||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||| ||||||| | ||||    
T  7888731 tcattgattccacaactggtggttttgaagccggtttttgtaaggatggtcagaccactgaacatgttcaacttgccttcgctctcggtgtttaaaaaat 7888830  T
Q  101 gatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggtt 200  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||| |||| |||||||||||||||| ||||||    
T  7888831 gatctgctgctgcaacaagatggatgccactacacccatatactcctaggacaggtatgaagaaattgtgaatcaagtttcaccctttttgagagaggtt 7888930  T
Q  201 ggctataa 208  Q
    ||||||||    
T  7888931 ggctataa 7888938  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 38138021 - 38138143
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||  || ||||||||||||| || | |    
T  38138021 agatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagatga 38138120  T
Q  218 aattccttttatccctatctctg 240  Q
    |||||| ||| | || |||||||    
T  38138121 aattccatttgttcccatctctg 38138143  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 3300853 - 3300731
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 217  Q
    ||||||||||||||||||| || ||||| |||| |||||||||| |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  3300853 agatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 3300754  T
Q  218 aattccttttatccctatctctg 240  Q
    |||||| ||| | || |||||||    
T  3300753 aattccatttgttcccatctctg 3300731  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 45983863 - 45983953
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataa 208  Q
    ||||||||||||||||||| |||||||| | ||||||||||| | |||||||||| ||| ||| ||||| |||||   |||||||||||||    
T  45983863 agatggatgccactacacctaaatactctagggataggtatgtagaaattgtgaggcaagttttaccctgtttgaataaggttggctataa 45983953  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 43045119 - 43044997
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 217  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43045119 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43045020  T
Q  218 aattccttttatccctatctctg 240  Q
    |||||| ||| | || |||||||    
T  43045019 aattccatttgttcccatctctg 43044997  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 43066872 - 43066994
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 217  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43066872 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43066971  T
Q  218 aattccttttatccctatctctg 240  Q
    |||||| ||| | || |||||||    
T  43066972 aattccatttgttcccatctctg 43066994  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 43083963 - 43083841
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 217  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43083963 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43083864  T
Q  218 aattccttttatccctatctctg 240  Q
    |||||| ||| | || |||||||    
T  43083863 aattccatttgttcccatctctg 43083841  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 50912501 - 50912450
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgt 169  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| |||||||    
T  50912501 agatggatgctactactcccaaatactccaagggtaggtatgaagaaattgt 50912450  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 43045312 - 43045209
Alignment:
Q  16 ctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaa 115  Q
    |||||||||||||||| ||| ||| |||| |||||||||||  |||||||| ||  ||||| | | ||||||||||    |||||||||||||| || ||    
T  43045312 ctggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaa 43045213  T
Q  116 caag 119  Q
    ||||    
T  43045212 caag 43045209  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 43045765 - 43045662
Alignment:
Q  16 ctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaa 115  Q
    |||||||||||||||| ||| ||| |||| |||||||||||  |||||||| ||  ||||| | | ||||||||||    |||||||||||||| || ||    
T  43045765 ctggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaa 43045666  T
Q  116 caag 119  Q
    ||||    
T  43045665 caag 43045662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 43066642 - 43066745
Alignment:
Q  16 ctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaa 115  Q
    |||||||||||||||| ||| ||| |||| |||||||||||  |||||||| ||  ||||| | | ||||||||||    |||||||||||||| || ||    
T  43066642 ctggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaa 43066741  T
Q  116 caag 119  Q
    ||||    
T  43066742 caag 43066745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 43084193 - 43084090
Alignment:
Q  16 ctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaa 115  Q
    |||||||||||||||| ||| ||| |||| |||||||||||  |||||||| ||  ||||| | | ||||||||||    |||||||||||||| || ||    
T  43084193 ctggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttcactcttggtgtgaagcaaatgatctgctgttgcaa 43084094  T
Q  116 caag 119  Q
    ||||    
T  43084093 caag 43084090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 38137812 - 38137930
Alignment:
Q  1 tcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaat 100  Q
    ||||||| || ||| ||||| ||||||||||||||| || | || | |||||||||  |||||||| ||  ||||| | || |||||||||    |||||    
T  38137812 tcattgattccacaactggtagttttgaagctggttattctcaggaaggtcagacctctgaacatgctcttcttgcattcgttcttggtgtgcgccaaat 38137911  T
Q  101 gatctgctgctgtaacaag 119  Q
    |||||||||||| ||||||    
T  38137912 gatctgctgctgcaacaag 38137930  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 40034688 - 40034762
Alignment:
Q  45 aatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaag 119  Q
    ||||||||||||| |||||||| ||  ||||||||  ||||||||||    ||||||||||||||||| ||||||    
T  40034688 aatggtcagaccactgaacatgctcttcttgcctatactcttggtgtgaatcaaatgatctgctgctgcaacaag 40034762  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 40034854 - 40034907
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 171  Q
    |||||||||| ||||||||||||||||| |||| ||||| |||| || ||||||    
T  40034854 agatggatgcaactacacccaaatactctaagggtaggtttgaagaacttgtga 40034907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 34690965 - 34690912
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 171  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34690965 agatggatgccattacacccaaatactccaaggataggtatgaactaattgtga 34690912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 34713377 - 34713324
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 171  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34713377 agatggatgccattacacccaaatactccaaggataggtatgaactaattgtga 34713324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 33861155 - 33861060
Alignment:
Q  15 cctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgc 110  Q
    |||||||||||||||| |||||||| |||| |||||||||||  ||||||||  |  || |||| | ||||||||||  | |||||||||||||||    
T  33861155 cctggtggttttgaagttggtttttctaagcatggtcagacccgtgaacatgcccttctcgcctgcactcttggtgtgcctcaaatgatctgctgc 33861060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 16232306 - 16232253
Alignment:
Q  118 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 171  Q
    ||||| ||||||||||||| |||||||||||||| || ||||||  ||||||||    
T  16232306 agatgaatgccactacaccgaaatactccaaggacagatatgaagtaattgtga 16232253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 4231785 - 4231682
Alignment:
Q  16 ctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaa 115  Q
    |||||||||||||||||||| |||  ||| ||||||||||   |||||||| ||  ||||| | | ||||||||||    ||||||||||||||||| ||    
T  4231785 ctggtggttttgaagctggtatttccaaggatggtcagactcgtgaacatgctctccttgctttcactcttggtgtgaggcaaatgatctgctgctgcaa 4231686  T
Q  116 caag 119  Q
    ||||    
T  4231685 caag 4231682  T

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