View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10311_low_13 (Length: 235)

Name: NF10311_low_13
Description: NF10311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10311_low_13
NF10311_low_13
[»] chr6 (44 HSPs)
chr6 (16-221)||(26638326-26638531)
chr6 (16-221)||(26744292-26744497)
chr6 (21-219)||(26626058-26626254)
chr6 (21-219)||(26732035-26732231)
chr6 (65-221)||(31287555-31287711)
chr6 (18-221)||(26952531-26952729)
chr6 (48-221)||(28795347-28795514)
chr6 (48-221)||(27657776-27657947)
chr6 (49-221)||(26658930-26659099)
chr6 (49-221)||(26764901-26765070)
chr6 (17-203)||(25491203-25491386)
chr6 (48-202)||(26876514-26876665)
chr6 (55-221)||(27662408-27662574)
chr6 (65-221)||(26887763-26887913)
chr6 (18-221)||(28789295-28789490)
chr6 (50-206)||(26851483-26851637)
chr6 (68-216)||(27590170-27590315)
chr6 (112-220)||(25077031-25077136)
chr6 (65-211)||(27715546-27715689)
chr6 (68-216)||(27674599-27674744)
chr6 (47-154)||(25080258-25080365)
chr6 (61-163)||(26808430-26808532)
chr6 (48-206)||(26826832-26826990)
chr6 (119-206)||(26805547-26805631)
chr6 (65-203)||(27681928-27682063)
chr6 (65-206)||(27074214-27074352)
chr6 (92-206)||(26061564-26061673)
chr6 (92-206)||(26081534-26081643)
chr6 (65-208)||(25486335-25486475)
chr6 (65-208)||(25547945-25548085)
chr6 (65-208)||(26058884-26059024)
chr6 (65-208)||(26078854-26078994)
chr6 (168-205)||(27528708-27528745)
chr6 (65-203)||(27608164-27608302)
chr6 (68-206)||(26962072-26962207)
chr6 (48-86)||(31290384-31290422)
chr6 (65-208)||(25513840-25513980)
chr6 (65-206)||(26649440-26649584)
chr6 (65-206)||(26755408-26755552)
chr6 (68-206)||(27695621-27695759)
chr6 (129-203)||(28246415-28246486)
chr6 (172-202)||(27425032-27425062)
chr6 (129-208)||(26146029-26146105)
chr6 (129-203)||(28239437-28239508)
[»] scaffold0277 (2 HSPs)
scaffold0277 (18-221)||(1743-1941)
scaffold0277 (18-221)||(10709-10904)
[»] chr4 (9 HSPs)
chr4 (22-216)||(18676642-18676841)
chr4 (22-216)||(18652560-18652759)
chr4 (22-206)||(18696501-18696684)
chr4 (22-216)||(18728581-18728780)
chr4 (129-215)||(18686686-18686769)
chr4 (22-216)||(18721156-18721355)
chr4 (22-98)||(18686812-18686890)
chr4 (172-202)||(18076493-18076523)
chr4 (171-216)||(18700984-18701029)
[»] chr1 (4 HSPs)
chr1 (65-216)||(265366-265514)
chr1 (47-222)||(26138941-26139113)
chr1 (53-206)||(28129713-28129863)
chr1 (53-206)||(28124682-28124832)
[»] chr2 (1 HSPs)
chr2 (70-215)||(17990178-17990320)
[»] scaffold0419 (2 HSPs)
scaffold0419 (129-205)||(10551-10624)
scaffold0419 (48-97)||(10473-10522)
[»] scaffold0349 (1 HSPs)
scaffold0349 (65-211)||(16256-16399)
[»] chr8 (1 HSPs)
chr8 (65-216)||(29270877-29271028)
[»] scaffold0038 (2 HSPs)
scaffold0038 (129-203)||(46577-46648)
scaffold0038 (129-203)||(39599-39670)
[»] scaffold0003 (1 HSPs)
scaffold0003 (172-202)||(62301-62331)


Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 44)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 26638326 - 26638531
Alignment:
Q  16 gttatatagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26638326 gttatatagtatttcatatatatttgataatgtgtaatatatcttatactaaactaacagaaactacatgaagctggatgcactgatattcgttttccaa 26638425  T
Q  116 ccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26638426 ccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctat 26638525  T
Q  216 tcttct 221  Q
    ||||||    
T  26638526 tcttct 26638531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 26744292 - 26744497
Alignment:
Q  16 gttatatagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26744292 gttatatagtatttcatatatatttgataatgtgtaatatatcttatactaaactaacagaaactacatgaagctggatgcactgatattcgttttccaa 26744391  T
Q  116 ccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26744392 ccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctat 26744491  T
Q  216 tcttct 221  Q
    ||||||    
T  26744492 tcttct 26744497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 26626058 - 26626254
Alignment:
Q  21 atagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccaga 120  Q
    ||||||||| ||||||| ||||||||||  ||||||| |||| |||||| |||||||| ||||||| |||||||||||  |||||||||| |  | |       
T  26626058 atagtattttatatataattgataatgt--aatatattttattctaaacaaacagaaagtacatgaggctggatgcaccaatattcgtttccataacgcc 26626155  T
Q  121 acagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattctt 219  Q
    | ||||| |||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26626156 aaagaggggattccagattggttcgagcatcaaatcaggggacacaacacaatttctttctggtttcgtaaaaagatcccttctattacttcttttctt 26626254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 26732035 - 26732231
Alignment:
Q  21 atagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccaga 120  Q
    ||||||||| ||||||| ||||||||||  ||||||| |||| |||||| |||||||| ||||||| |||||||||||  |||||||||| |  | |       
T  26732035 atagtattttatatataattgataatgt--aatatattttattctaaacaaacagaaagtacatgaggctggatgcaccaatattcgtttccataacgcc 26732132  T
Q  121 acagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattctt 219  Q
    | ||||| |||||||||||||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26732133 aaagaggggattccagattggttcgagcatcaaatcaggggacacaacacaatttctttctggtttcgtaaaaagatcccttctattacttcttttctt 26732231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 31287555 - 31287711
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    |||||||||||||||||||||| |||||| |||||||  ||  ||| ||||   ||||||| | ||||||| ||||||| ||||| |||| |||||||||    
T  31287555 taaactaacagaaactacatgaggctggaggcactgaattttatttcccaaatggaacagatgggattccaaattggtttgagcaccaaatcaggggaca 31287654  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattcttct 221  Q
      |||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  31287655 aagcacaattactttctggtttcgtaaaaagatcccttctattacttatattcttct 31287711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 26952531 - 26952729
Alignment:
Q  18 tatatagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaacc 117  Q
    |||||||||||| ||||||| | |||||| |  || ||||||||| ||||||| |||||||||| |  | |||||||||||  |||||| ||| |||| |    
T  26952531 tatatagtatttgatatataatcgataattt--aacatatcttattctaaacttacagaaactaaacaaggctggatgcacctatattcatttcccaaac 26952628  T
Q  118 agaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattc 217  Q
    | |||||||| ||||||||||||||| ||||| |||| |||||||   | ||||||||||||||||||||||| ||||||||||||||| |||| ||||     
T  26952629 aaaacagaggggattccagattggtttgagcaccaaaccagggga---gacacaatttctttctggtttcgtagaaagatcccttctataacttgtattt 26952725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 28795347 - 28795514
Alignment:
Q  48 tgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgag 147  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||||||   |||||||||| |||| |   |  || | |||||||||||||||||||    
T  28795347 tgtaatatatcttattctaaactaacagaagctacatgaggctggatgca---atattcgtttcccaaacttcagtgatgggattccagattggttcgag 28795443  T
Q  148 catcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattcttct 221  Q
    || |||||||||||| |   ||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||||    
T  28795444 caccaaagcaggggaga---cacaatttccttctggttttgtaaaaagatcccttctattatttctattattct 28795514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 221
Target Start/End: Complemental strand, 27657947 - 27657776
Alignment:
Q  48 tgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgag 147  Q
    ||||||||||||||| |||||| ||||||| ||| |||| ||||||||||| |||||||||||  ||| |  || ||||| |||||||||||||| ||||    
T  27657947 tgtaatatatcttattctaaacaaacagaacctaaatgatgctggatgcaccgatattcgtttctcaaacgtaaaagaggggattccagattggtacgag 27657848  T
Q  148 catcaaagcagggg-acatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattcttct 221  Q
    || |||| |||||| | ||   |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  27657847 caccaaatcagggggagat---acaatttctttctggtttcgtaaaaagatcccttctgttacttccatttttct 27657776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 26658930 - 26659099
Alignment:
Q  49 gtaatatatcttatgctaaactaacagaaactacatgaagctggatgcact-gatattcgttttccaaccagaacagaggagattccagattggttcgag 147  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||| | ||||  |||||||||| |  | |||  ||| |||||||||||||||    
T  26658930 gtaatatattttatgctaaactaacagaaactacatgaggctggatgtactcgttatta-ttttccaaccggggctgagaggatcccagattggttcgag 26659028  T
Q  148 catcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattcttct 221  Q
    || |||| |||||||||    ||| |||||||||||||||||||||||||||||||||||| || |||||||||    
T  26659029 caccaaatcaggggacaa---acagtttctttctggtttcgtaaaaagatcccttctattatttgtattcttct 26659099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 26764901 - 26765070
Alignment:
Q  49 gtaatatatcttatgctaaactaacagaaactacatgaagctggatgcact-gatattcgttttccaaccagaacagaggagattccagattggttcgag 147  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||| | ||||  |||||||||| |  | |||  ||| |||||||||||||||    
T  26764901 gtaatatattttatgctaaactaacagaaactacatgaggctggatgtactcgttatta-ttttccaaccggggctgagaggatcccagattggttcgag 26764999  T
Q  148 catcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattcttct 221  Q
    || |||| |||||||||    ||| |||||||||||||||||||||||||||||||||||| || |||||||||    
T  26765000 caccaaatcaggggacaa---acagtttctttctggtttcgtaaaaagatcccttctattatttgtattcttct 26765070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 25491386 - 25491203
Alignment:
Q  17 ttatatagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaac 116  Q
    ||||||||||||||||||||| || ||| |||   ||||||||||| |||||||||||| ||||||| || ||||||||||| || ||| |||| ||||     
T  25491386 ttatatagtatttcatatataattcatagtgtaatatatatcttattctaaactaacagcaactacacgaggctggatgcaccgagatttgtttgccaaa 25491287  T
Q  117 cagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttc 203  Q
    || ||  ||||  |||||||||||||||||||| ||||  |||||||   | |||||||||||||||||| ||||| | ||||||||    
T  25491286 cacaagtgagggaattccagattggttcgagcaccaaattaggggac---ggacaatttctttctggttttgtaaagaaatcccttc 25491203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 26876514 - 26876665
Alignment:
Q  48 tgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgag 147  Q
    |||||||||||  ||||||||||| |||||||||||||| |||||||||||  |||||| | | |||| | ||||||||| ||||||||| |||||| |     
T  26876514 tgtaatatatcacatgctaaactaccagaaactacatgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggttccaa 26876613  T
Q  148 catcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatccctt 202  Q
    || |||| || ||||||    ||||||||||||||||||||||||||||||||||    
T  26876614 caccaaatcacgggaca---aacaatttctttctggtttcgtaaaaagatccctt 26876665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 27662574 - 27662408
Alignment:
Q  55 tatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaa 154  Q
    ||||||||||||| |||||||  ||| || || ||||| ||||   |||||  ||| |||||| ||||||||| |||||||||||||||||||||||||     
T  27662574 tatcttatgctaatctaacagcgactgcacgatgctggttgcaacaatattgttttgccaaccggaacagaggggattccagattggttcgagcatcaag 27662475  T
Q  155 gcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattcttct 221  Q
     |||||||||   | ||||||||||||||||  ||||||||||||||||||| |||| |||| ||||    
T  27662474 tcaggggacacaactcaatttctttctggttatgtaaaaagatcccttctataacttgtattattct 27662408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 26887763 - 26887913
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    ||||||||||||||||| |||| ||||||||||| ||  ||| ||| |||| | ||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  26887763 taaactaacagaaactatatgaggctggatgcacagagtttcttttcccaaacggaagagaggggattccagattggtttgagcaccaaagcaggggaca 26887862  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattcttct 221  Q
       |||| |||||||||||||||||||| |||||   ||||| |||| |||||||||    
T  26887863 ---cacactttctttctggtttcgtaaagagatc---tctataacttgtattcttct 26887913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 28789295 - 28789490
Alignment:
Q  18 tatatagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaacc 117  Q
    ||||||||||| |||||| | | ||||||||  || ||||||||| |||||||||||||| ||| |||| |||||||||| |   |||  ||| |||| |    
T  28789295 tatatagtattacatatacaatcgataatgt--aacatatcttattctaaactaacagaagctaaatgaggctggatgcatt---atttctttcccaaac 28789389  T
Q  118 agaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattc 217  Q
       |  || | ||||||||||||||||||||| |||||||||||| |   |||||||||||||||||||||||||||||||||||||| || |||||||     
T  28789390 ttcagtgatgggattccagattggttcgagcaccaaagcaggggaga---cacaatttctttctggtttcgtaaaaagatcccttctaatatttctatta 28789486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 26851483 - 26851637
Alignment:
Q  50 taatatatcttat-gctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagc 148  Q
    |||||||| |||| |||||  |||||| |||||||||| |||||||| ||  |||||  ||| |||| | ||||||| | ||||||||||||||||||||    
T  26851483 taatatattttattgctaatgtaacagcaactacatgacgctggatgtaccaatattattttgccaagcggaacagaagggattccagattggttcgagc 26851582  T
Q  149 atcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    | |||||||||| | |   ||||||||| |||||||||||||||||||||||||||||    
T  26851583 accaaagcagggaaaa---cacaatttccttctggtttcgtaaaaagatcccttctat 26851637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 27590315 - 27590170
Alignment:
Q  68 actaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatgg 167  Q
    |||||||| |||||||||| ||| |||||||| || ||  ||| |||| | ||||||||| ||| ||||||||||| ||||| ||||||||||||   |     
T  27590315 actaacaggaactacatgaggctcgatgcacttatttttatttcccaaacggaacagaggggataccagattggtttgagcaccaaagcagggga---ga 27590219  T
Q  168 cacaatttctttctggtttcgtaaaaagatcccttctattacttctatt 216  Q
    ||||||||||||||||||||||||| | ||||||||||| |||| ||||    
T  27590218 cacaatttctttctggtttcgtaaagaaatcccttctatgacttatatt 27590170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 25077031 - 25077136
Alignment:
Q  112 ccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattactt 211  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    |||| |   ||||||||||||||||||||| ||||||||||||||||||||||    
T  25077031 ccaaccagaaaagaggggattccagattggttcgagcaccaaatggagggaga---cacaatttctttctggtttcgcaaaaagatcccttctattactt 25077127  T
Q  212 ctattcttc 220  Q
     ||||||||    
T  25077128 gtattcttc 25077136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 27715689 - 27715546
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    ||||| |||||||||||||| | |||||||||||  |||||   || |||| | ||||||| | ||| ||||||||||| ||||| |||||||||||||     
T  27715689 taaacaaacagaaactacatcaggctggatgcacctatattaaattcccaaacggaacagatgggataccagattggtttgagcaccaaagcaggggacc 27715590  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctattactt 211  Q
       ||||||||||||||||||||||||| | ||||||||||| ||||    
T  27715589 ---cacaatttctttctggtttcgtaaagaaatcccttctataactt 27715546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 27674744 - 27674599
Alignment:
Q  68 actaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatgg 167  Q
    |||||||| |||||||||| ||| ||||||||  | ||| ||| |||| |  || ||||| ||| ||||||||||| ||||| |||||||||||| |       
T  27674744 actaacaggaactacatgaggctcgatgcactcgttttcttttcccaaacgaaaaagaggggataccagattggtttgagcaccaaagcaggggaga--- 27674648  T
Q  168 cacaatttctttctggtttcgtaaaaagatcccttctattacttctatt 216  Q
    ||||||||||||||||||||||||| | ||||||||||| |||| ||||    
T  27674647 cacaatttctttctggtttcgtaaagaaatcccttctatgacttatatt 27674599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 25080258 - 25080365
Alignment:
Q  47 gtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcga 146  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| || || |  ||||| | || |||||  ||||||||| ||||| ||||||||||||    
T  25080258 gtgtaatatttcttatgctaaactaacagaaactacatgaggctagaagcgcgaatatttgattgccaactggaacagaggggattctagattggttcga 25080357  T
Q  147 gcatcaaa 154  Q
    ||| ||||    
T  25080358 gcaccaaa 25080365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 26808430 - 26808532
Alignment:
Q  61 atgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggg 160  Q
    ||||||||||||||||| |||||||| |||| || |||  ||||| |||| ||||  |||||||||| ||||||||||||||||||||| |||| || ||    
T  26808430 atgctaaactaacagaacctacatgaggctgtatccaccaatatttgtttgccaaaaagaacagaggggattccagattggttcgagcaccaaatcaagg 26808529  T
Q  161 gac 163  Q
    |||    
T  26808530 gac 26808532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 26826832 - 26826990
Alignment:
Q  48 tgtaatatatcttatgctaaactaacagaaactacatgaagctgga---tgcactgatattcgttttccaaccagaacagaggagattccagattggttc 144  Q
    ||||||||||||||| || | ||||||||||| |||||| ||||||   |||||  | ||| |||| | || || ||  |||| |||||||||| ||||     
T  26826832 tgtaatatatcttatactgatctaacagaaacgacatgaggctggaagatgcaccaagatttgtttgctaaacaaaagtgaggggattccagatcggttt 26826931  T
Q  145 gagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    ||||| |||||||| ||| |   ||||||||||||||||||||||||||| |||||||||||    
T  26826932 gagcaccaaagcagaggaga---cacaatttctttctggtttcgtaaaaaaatcccttctat 26826990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 26805547 - 26805631
Alignment:
Q  119 gaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    ||||||||| ||| ||||||||||| ||||| ||||||| |||||    ||||||||||||||||||||||||| | |||||||||||    
T  26805547 gaacagaggggataccagattggtttgagcaccaaagcaagggacc---cacaatttctttctggtttcgtaaagaaatcccttctat 26805631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 203
Target Start/End: Original strand, 27681928 - 27682063
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    ||||| |||||||||||||||| || ||||||||  | |||  ||| ||||   ||| ||||| ||| ||||||||||| ||||| |||||||||||||     
T  27681928 taaacaaacagaaactacatgaggcgggatgcaccaagatttatttcccaaatggaagagaggggataccagattggtttgagcaccaaagcaggggac- 27682026  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttc 203  Q
       || |||||||||||||||||||||| | ||||||||    
T  27682027 --ccataatttctttctggtttcgtaaagaaatcccttc 27682063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 27074214 - 27074352
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    ||||| ||||| |||||||||| |||||||||||    ||| |||| ||||  ||||  |||||||||||||||||||| ||||| | ||||| |||| |    
T  27074214 taaaccaacaggaactacatgaggctggatgcacctggattagtttcccaaatagaagtgaggagattccagattggtttgagcaccgaagcatgggaaa 27074313  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    ||   |||||||||| |||||| ||||| |||||||| ||||    
T  27074314 tg---caatttctttttggtttagtaaagagatccctactat 27074352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 26061564 - 26061673
Alignment:
Q  92 gatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaa 191  Q
    |||||||  ||||| ||||||||||  ||||||||| |||||||||||||||  |||| |||| || ||||     |||||||| |||||||||||||||    
T  26061564 gatgcaccaatatttgttttccaacaggaacagaggggattccagattggttaaagcaccaaatcacggga-----cacaatttttttctggtttcgtaa 26061658  T
Q  192 aaagatcccttctat 206  Q
    | | |||||||||||    
T  26061659 ataaatcccttctat 26061673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 26081534 - 26081643
Alignment:
Q  92 gatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaa 191  Q
    |||||||  ||||| ||||||||||  ||||||||| |||||||||||||||  |||| |||| || ||||     |||||||| |||||||||||||||    
T  26081534 gatgcaccaatatttgttttccaacaggaacagaggggattccagattggttaaagcaccaaatcacggga-----cacaatttttttctggtttcgtaa 26081628  T
Q  192 aaagatcccttctat 206  Q
    | | |||||||||||    
T  26081629 ataaatcccttctat 26081643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 25486335 - 25486475
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    ||||||||||||||||||||||  |||| |||||  || |||  || |||| || ||| ||   |||||| |||||||| ||||| ||||||||||||      
T  25486335 taaactaacagaaactacatgagtctgggtgcacccattttctattcccaaacacaacggaaaggattcctgattggtttgagcaccaaagcagggga-- 25486432  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctatta 208  Q
     |||||||||||||||||||||  |||| |  ||||||||||||    
T  25486433 -ggcacaatttctttctggtttgataaagaactcccttctatta 25486475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 25547945 - 25548085
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    |||| |||||||||||||||||| ||||||||||  || |||  || |||| || ||||||   |||||| |||||||| ||||| ||||||||||||      
T  25547945 taaaataacagaaactacatgaatctggatgcacccattttcaattcccaaacacaacagaaaggattcctgattggtttgagcaccaaagcagggga-- 25548042  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctatta 208  Q
     |  ||||||||||||||||||  |||| |  ||||||||||||    
T  25548043 -gagacaatttctttctggtttgataaagaactcccttctatta 25548085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 26058884 - 26059024
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    |||| |||||||||||||||||  ||||||||||  ||||||  || |||| || ||| ||   |||||| |||||||| ||||| ||||||||||||      
T  26058884 taaattaacagaaactacatgagtctggatgcacccatattctattcccaaacacaacggataggattcctgattggtttgagcaccaaagcagggga-- 26058981  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctatta 208  Q
     | |||||||||||||||||||  |||| |  ||||||||||||    
T  26058982 -gacacaatttctttctggtttgataaagaactcccttctatta 26059024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 26078854 - 26078994
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    |||| |||||||||||||||||  ||||||||||  ||||||  || |||| || ||| ||   |||||| |||||||| ||||| ||||||||||||      
T  26078854 taaattaacagaaactacatgagtctggatgcacccatattctattcccaaacacaacggataggattcctgattggtttgagcaccaaagcagggga-- 26078951  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctatta 208  Q
     | |||||||||||||||||||  |||| |  ||||||||||||    
T  26078952 -gacacaatttctttctggtttgataaagaactcccttctatta 26078994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 27528745 - 27528708
Alignment:
Q  168 cacaatttctttctggtttcgtaaaaagatcccttcta 205  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27528745 cacaatttctttctggtttcgtaaaaagatcccttcta 27528708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 203
Target Start/End: Complemental strand, 27608302 - 27608164
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggag---attccagattggttcgagcatcaaagcagggg 161  Q
    ||||| |||||||||||||||| |||||||||||  || ||   || |||| | |||||||| ||   || ||||||||||| ||||| |||||||||||    
T  27608302 taaacaaacagaaactacatgaggctggatgcacctattttgaattcccaaacggaacagagcaggggataccagattggtttgagcaccaaagcagggg 27608203  T
Q  162 acatggcacaatttctttctggtttcgtaaaaagatcccttc 203  Q
    ||    |||| |||||||||||||||||||| | ||||||||    
T  27608202 act---cacactttctttctggtttcgtaaagaaatcccttc 27608164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 26962072 - 26962207
Alignment:
Q  68 actaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatgg 167  Q
    |||||||| | |||||||| |||||||||||  | ||| |||| |||| | |||  |||| ||||||||||||||| ||||| ||||| | ||||   |     
T  26962072 actaacaggacctacatgaggctggatgcaccaagattagtttcccaaacggaagtgaggggattccagattggtttgagcaccaaagaaaggga---ga 26962168  T
Q  168 cacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    |||| |||||||||||| ||| |||||||||||| ||||    
T  26962169 cacattttctttctggtatcgcaaaaagatccctactat 26962207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 31290384 - 31290422
Alignment:
Q  48 tgtaatatatcttatgctaaactaacagaaactacatga 86  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  31290384 tgtaatatatcttattctaaactaacagaaactacatga 31290422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 25513840 - 25513980
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    |||| |||||||||||||||||| ||||||||||  || |||  || |||| || ||| |    |||||| |||||||| ||||| ||||||||||||      
T  25513840 taaattaacagaaactacatgaatctggatgcacccattttcacttcccaaacacaacgggaaggattcctgattggtttgagcaccaaagcagggga-- 25513937  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctatta 208  Q
     | ||||||| ||||||||| || |||| | |||||||||||||    
T  25513938 -gtcacaattgctttctggtatcataaagaaatcccttctatta 25513980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 26649440 - 26649584
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgat---attcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagc---ag 158  Q
    |||||||||||||||||||  | |||||||||| |||    |||| | | |||| | ||| ||||| |||||||||||||||||| || |||| |   ||    
T  26649440 taaactaacagaaactacacaaggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaatcgttag 26649539  T
Q  159 gggacatggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    |||| |   |||||||||||| |||||||||||||| |||||||||||    
T  26649540 gggaga---cacaatttctttttggtttcgtaaaaatatcccttctat 26649584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 26755408 - 26755552
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgat---attcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagc---ag 158  Q
    |||||||||||||||||||  | |||||||||| |||    |||| | | |||| | ||| ||||| |||||||||||||||||| || |||| |   ||    
T  26755408 taaactaacagaaactacacaaggctggatgcattgaggagattcttatgccaaacggaatagaggggattccagattggttcgaacaccaaatcgttag 26755507  T
Q  159 gggacatggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    |||| |   |||||||||||| |||||||||||||| |||||||||||    
T  26755508 gggaga---cacaatttctttttggtttcgtaaaaatatcccttctat 26755552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 206
Target Start/End: Complemental strand, 27695759 - 27695621
Alignment:
Q  68 actaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagag---gagattccagattggttcgagcatcaaagcaggggaca 164  Q
    |||||||| |||||||||| ||| ||||||||  | ||  ||| |||| | ||||||||   | ||| ||||||||||| ||||| |||||||||||| |    
T  27695759 actaacagcaactacatgaggctcgatgcactcgttttgatttcccaaacggaacagagctggggataccagattggtttgagcaccaaagcaggggaga 27695660  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
       |||||||||||| ||||||| |||| | |||||||||||    
T  27695659 ---cacaatttctttttggtttcataaagaaatcccttctat 27695621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 28246415 - 28246486
Alignment:
Q  129 gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttc 203  Q
    ||||||||||||||| || || ||||||| |||||||   ||||||||||| ||||||||||| ||| |||||||    
T  28246415 gattccagattggtttgatcaccaaagcatgggacat---acaatttctttttggtttcgtaacaagctcccttc 28246486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Complemental strand, 27425062 - 27425032
Alignment:
Q  172 atttctttctggtttcgtaaaaagatccctt 202  Q
    |||||||||||||||||||||||||||||||    
T  27425062 atttctttctggtttcgtaaaaagatccctt 27425032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 26146029 - 26146105
Alignment:
Q  129 gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctatta 208  Q
    |||||| |||||||| ||||| ||||||||||||   |||| |||| ||||||||| || ||||||  ||||||||||||    
T  26146029 gattcctgattggtttgagcaccaaagcagggga---ggcaaaattgctttctggtatcataaaaaactcccttctatta 26146105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 28239437 - 28239508
Alignment:
Q  129 gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttc 203  Q
    ||||||||| ||||| || ||||||| || |||||||   ||||||||||| ||||||||||| ||| |||||||    
T  28239437 gattccagagtggtttgatcatcaaaacatgggacat---acaatttctttttggtttcgtaacaagctcccttc 28239508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 1941 - 1743
Alignment:
Q  18 tatatagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaacc 117  Q
    ||||||||||| |||||| | | ||||||||  || ||||||||| |||||||||||||| |||||||| |||||||||| |  | ||||||| |||| |    
T  1941 tatatagtattacatatacaatcgataatgt--aacatatcttattctaaactaacagaagctacatgaggctggatgcattctttttcgtttcccaaac 1844  T
Q  118 agaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattc 217  Q
       |  || | ||||||||||||||||||||| |||||||||||| |   |||||||||||||||||||||||||||||||||||||| || |||||||     
T  1843 ttcagtgatgggattccagattggttcgagcaccaaagcaggggaga---cacaatttctttctggtttcgtaaaaagatcccttctaatatttctatta 1747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 10904 - 10709
Alignment:
Q  18 tatatagtatttcatatatatttgataatgtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaacc 117  Q
    ||||||||||| |||||| | | ||||||||  || ||||||||| |||||||||||||| ||| |||| ||||||||||   ||||| |||| |||| |    
T  10904 tatatagtattacatatacaatcgataatgt--aacatatcttattctaaactaacagaagctaaatgaggctggatgca---atatttgtttcccaaac 10810  T
Q  118 agaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattc 217  Q
       |  || | ||||||||||||||||||||| |||||||||||| |   |||||||||||||||||||||||||||||||||||||| || |||||||     
T  10809 ttcagtgatgggattccagattggttcgagcaccaaagcaggggaga---cacaatttctttctggtttcgtaaaaagatcccttctaatatttctatta 10713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 18676841 - 18676642
Alignment:
Q  22 tagtatttcatatatatttgataatgtgtaatatat--cttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccag 119  Q
    |||||||||| ||||| |  | ||||||||||||||  |||||||||||||||||| || ||||||| ||||| |||||  ||||| |||| |||| | |    
T  18676841 tagtatttcacatataatcaacaatgtgtaatatatatcttatgctaaactaacagcaattacatgaggctgggtgcaccaatatttgtttcccaaacgg 18676742  T
Q  120 aacagagga------gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttct 213  Q
    |||||||||      ||||||||||||||||||||||||||||||||| ||     |||||||||||||||| |||||||||||||||||||| ||||||    
T  18676741 aacagaggagattaggattccagattggttcgagcatcaaagcaggggtca---atcaatttctttctggttccgtaaaaagatcccttctataacttct 18676645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 18652759 - 18652560
Alignment:
Q  22 tagtatttcatatatatttgataatgtgtaatatat--cttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccag 119  Q
    |||||||||| ||||| |  | ||||||||||||||  |||||||||||||||||| || ||||||| ||||| |||||  ||||| |||| |||| | |    
T  18652759 tagtatttcacatataatcaacaatgtgtaatatatatcttatgctaaactaacagcaattacatgaggctgggtgcaccaatatttgtttcccaaacgg 18652660  T
Q  120 aacagaggagatt------ccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttct 213  Q
    |||||||| ||||      ||||||||||||||||||||||||||||| ||     |||||||||||||||| |||||||||||||||||||| ||||||    
T  18652659 aacagaggggattaggattccagattggttcgagcatcaaagcaggggtcaat---caatttctttctggttccgtaaaaagatcccttctataacttct 18652563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 18696684 - 18696501
Alignment:
Q  22 tagtatttcatatatatttgataatgtgtaatatat--cttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccag 119  Q
    |||||||||| ||||| |  | ||||||||||||||  |||||||||||||||||| || ||||||| ||||| |||||  |  ||  ||| |||| | |    
T  18696684 tagtatttcacatataatcaacaatgtgtaatatatatcttatgctaaactaacagcaattacatgaggctgggtgcaccaaattttctttcccaaacgg 18696585  T
Q  120 aacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||     |||||||||||||||| ||||||||||||||||||||    
T  18696584 aacagaggggattccagattggttcgagcatcaaagcaggggtca---atcaatttctttctggttccgtaaaaagatcccttctat 18696501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 18728780 - 18728581
Alignment:
Q  22 tagtatttcatatatatttgataatgtgtaatatat--cttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttcc-aacca 118  Q
    |||||||||| ||||| |  | ||||||||||||||  |||||||||||||||||| || ||||||| ||||| |||||  | ||| ||||||| || |     
T  18728780 tagtatttcacatataatcaacaatgtgtaatatatatcttatgctaaactaacagcaattacatgaggctgggtgcacc-acatttgttttcccaaacg 18728682  T
Q  119 gaacagaggagatt------ccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttc 212  Q
    ||||||||| ||||      ||||||||||||||||||||||||||||| |||    ||||||||||||||||  ||||||||||||||||||| ||||     
T  18728681 gaacagaggtgattaggattccagattggttcgagcatcaaagcaggggtcat---tcaatttctttctggttctgtaaaaagatcccttctataacttt 18728585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 18686769 - 18686686
Alignment:
Q  129 gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctat 215  Q
    ||||||||||||||||||||||||||||||||| ||     ||||||||||||||||  ||||||||||||||||||| ||||||||    
T  18686769 gattccagattggttcgagcatcaaagcaggggtcaat---caatttctttctggttctgtaaaaagatcccttctataacttctat 18686686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 18721355 - 18721156
Alignment:
Q  22 tagtatttcatatatatttgataatgtgtaatatat--cttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccag 119  Q
    |||||||||| ||||| |  | ||||||||||||||  |||||||||||||||||| || ||||||| ||||| |||||     ||  ||| |||| | |    
T  18721355 tagtatttcacatataatcaacaatgtgtaatatatatcttatgctaaactaacagcaattacatgaggctgggtgcaccacactttctttcccaaacgg 18721256  T
Q  120 aac--agagga----gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttct 213  Q
    |||  ||||||    ||||||||||||||||||||| ||||||||||| |||    ||||||||||||||||  ||||||||||||||||||| |||| |    
T  18721255 aacagagaggattaggattccagattggttcgagcaccaaagcaggggtcat---tcaatttctttctggttctgtaaaaagatcccttctataactttt 18721159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 18686890 - 18686812
Alignment:
Q  22 tagtatttcatatatatttgataatgtgtaatatat--cttatgctaaactaacagaaactacatgaagctggatgcac 98  Q
    |||||||||| ||||| |  | ||||||||||||||  |||||||||||||||||| || ||||||| ||||| |||||    
T  18686890 tagtatttcacatataatcaacaatgtgtaatatatatcttatgctaaactaacagcaattacatgaggctgggtgcac 18686812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Original strand, 18076493 - 18076523
Alignment:
Q  172 atttctttctggtttcgtaaaaagatccctt 202  Q
    |||||||||||||||||||||||||||||||    
T  18076493 atttctttctggtttcgtaaaaagatccctt 18076523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 18701029 - 18700984
Alignment:
Q  171 aatttctttctggtttcgtaaaaagatcccttctattacttctatt 216  Q
    |||||||||||||||  ||||||||||||| ||||| |||||||||    
T  18701029 aatttctttctggttctgtaaaaagatcccatctataacttctatt 18700984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 265514 - 265366
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    |||||||||||||||||||||||||| |||||||| || |   ||| |||| | ||||||||| ||| ||||||||||| ||||| ||||||| |||| |    
T  265514 taaactaacagaaactacatgaagctcgatgcacttatttgtatttcccaaacggaacagaggggataccagattggtttgagcaccaaagcaagggaaa 265415  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctattacttctatt 216  Q
       ||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  265414 ---cacaatttctttctggtttcgtaaaaagatcccttctgttacttttatt 265366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 26138941 - 26139113
Alignment:
Q  47 gtgtaatatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcga 146  Q
    |||||||||||| ||| |||||||  ||| ||||||| ||||||||||||||||||||| |||| ||||| ||||   ||  ||||||||||||||||||    
T  26138941 gtgtaatatatcctattctaaactttcagcaactacacgaagctggatgcactgatatttgtttgccaactagaattaagaggattccagattggttcga 26139040  T
Q  147 gcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctattcttctc 222  Q
    ||| |||  | |||| ||    |||||||||||||||||| ||||||| ||||||||||| | ||||||| |||||    
T  26139041 gcaccaatccggggggca---gacaatttctttctggttttgtaaaaaaatcccttctataagttctatttttctc 26139113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 28129863 - 28129713
Alignment:
Q  53 tatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatca 152  Q
    ||||| |||||| ||||||||||||||||| ||| |||||||||| ||| ||| |||| |||||| |||| |||| |||||| ||||| ||||| || ||    
T  28129863 tatattttatgccaaactaacagaaactacttgaggctggatgcattgagatttgtttgccaaccggaactgaggggattcctgattgtttcgaacacca 28129764  T
Q  153 aagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    |||| ||||||||   ||  |||||||||||||||||||| | |||||||||||    
T  28129763 aagctggggacat---actgtttctttctggtttcgtaaagaaatcccttctat 28129713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 28124832 - 28124682
Alignment:
Q  53 tatatcttatgctaaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatca 152  Q
    ||||| |||||| ||||||||||||||||| ||| |||||||||| ||| ||| |||| |||||| |||| |||| |||||| ||||||||| | || ||    
T  28124832 tatattttatgccaaactaacagaaactacttgaggctggatgcattgagatttgtttgccaaccggaactgaggggattcctgattggttccaacacca 28124733  T
Q  153 aagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttctat 206  Q
    || | ||| ||||   ||  |||||||||||||||||||| | |||||||||||    
T  28124732 aaactgggaacat---actgtttctttctggtttcgtaaagaaatcccttctat 28124682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 215
Target Start/End: Complemental strand, 17990320 - 17990178
Alignment:
Q  70 taacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggca 169  Q
    |||||||| |||||||||||||||||||| || ||| |||| || ||| | ||||| | ||||||||||||||| ||||| ||||||||||| ||   ||    
T  17990320 taacagaacctacatgaagctggatgcacagagatttgtttcccgaccgggacagaagggattccagattggtttgagcaccaaagcagggggca---ca 17990224  T
Q  170 caatttctttctggtttcgtaaaaagatcccttctattacttctat 215  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||||    
T  17990223 caatttctttctggtttcgtaaagaaatcccttctataacttctat 17990178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 10551 - 10624
Alignment:
Q  129 gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttcta 205  Q
    ||||||||||||||||||||| |||||||||||| |   ||||||||||||||||||||||||||||||||||||||    
T  10551 gattccagattggttcgagcaccaaagcaggggaga---cacaatttctttctggtttcgtaaaaagatcccttcta 10624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 10473 - 10522
Alignment:
Q  48 tgtaatatatcttatgctaaactaacagaaactacatgaagctggatgca 97  Q
    ||||| ||||||||| |||||||||||||| ||| |||| ||||||||||    
T  10473 tgtaacatatcttattctaaactaacagaagctaaatgaggctggatgca 10522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 16256 - 16399
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggaca 164  Q
    ||||| |||||||||||||| | |||||||||||  |||||   || |||| | ||||||| | ||| ||||||||||| ||||| |||||||||||||     
T  16256 taaacaaacagaaactacatcaggctggatgcacctatattaaattcccaaacggaacagatgggataccagattggtttgagcaccaaagcaggggacc 16355  T
Q  165 tggcacaatttctttctggtttcgtaaaaagatcccttctattactt 211  Q
       ||||||||||||||||||||||||| | ||||||||||| ||||    
T  16356 ---cacaatttctttctggtttcgtaaagaaatcccttctataactt 16399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 29271028 - 29270877
Alignment:
Q  65 taaactaacagaaactacatgaagctggatgcactgatattcgttttccaaccagaacagaggag---attccagattggttcgagcatcaaagcagggg 161  Q
    ||||| ||||||||||||||||  ||||||||||  ||||||  |||  ||   |||||||| ||   || |||||||||||||| || |||||||||||    
T  29271028 taaacaaacagaaactacatgagactggatgcacctatattcaatttgaaaatggaacagagcaggggataccagattggttcgaacaccaaagcagggg 29270929  T
Q  162 acatggcacaatttctttctggtttcgtaaaaagatcccttctattacttctatt 216  Q
    ||    ||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  29270928 acc---cacaatttctttctggtttcgtaaagaaatcccttctattacttgtatt 29270877  T

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Target: scaffold0038 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 46577 - 46648
Alignment:
Q  129 gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttc 203  Q
    ||||||||||||||| || || ||||||| |||||||   ||||||||||| ||||||||||| ||| |||||||    
T  46577 gattccagattggtttgatcaccaaagcatgggacat---acaatttctttttggtttcgtaacaagctcccttc 46648  T

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Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 39599 - 39670
Alignment:
Q  129 gattccagattggttcgagcatcaaagcaggggacatggcacaatttctttctggtttcgtaaaaagatcccttc 203  Q
    ||||||||| ||||| || ||||||| || |||||||   ||||||||||| ||||||||||| ||| |||||||    
T  39599 gattccagagtggtttgatcatcaaaacatgggacat---acaatttctttttggtttcgtaacaagctcccttc 39670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 202
Target Start/End: Original strand, 62301 - 62331
Alignment:
Q  172 atttctttctggtttcgtaaaaagatccctt 202  Q
    |||||||||||||||||||||||||||||||    
T  62301 atttctttctggtttcgtaaaaagatccctt 62331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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