View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10311_low_4 (Length: 373)
Name: NF10311_low_4
Description: NF10311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10311_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 49331076 - 49330726
Alignment:
| Q |
17 |
agagttgaatgagtgaacctattttaaaggcaacaaaaattggaaggtgcaccctagaaatctaattgagtggaagtgagtgaatttgtgataacgtttc |
116 |
Q |
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| T |
49331076 |
agagttgaatgagtgaacctattttaaaggcaacaaaaattggaaggtgcaccctagaaatctaattgagtggaagtgagtgaatttgtgataacgtttc |
49330977 |
T |
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| Q |
117 |
cagttggtacttttgtaagcttatgaaaaaatgagttgtaatattttggatgattatgtgccnnnnnnncatttgttatta----tctctcccacccacc |
212 |
Q |
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| T |
49330976 |
cagttggtacttttgtaagcttatgaaaaaatgagttgtaatattttggatgattatgtgcctttttttcatttgttattatctctctctcccacccacc |
49330877 |
T |
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| Q |
213 |
attttatctacatgaaatgagtgtgaagaatttaacactgtaactttagataacatagttaaaatctcttaagtcagttgtaaaagaacatgtttgtagg |
312 |
Q |
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| T |
49330876 |
attttatctacatgaaatgagtgtgaagaatttaacactgtaactttagataacatagttaaaatctcttaagtcagttgtaaaagaacatgtttgtagg |
49330777 |
T |
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| Q |
313 |
a----cacgacactcaaaaaagtcacccatagaaattgatgtcccatattt |
359 |
Q |
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| T |
49330776 |
acacgcacgacactcaaaaaagtcacccatagaaattgatgtcccatattt |
49330726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 49328808 - 49328727
Alignment:
| Q |
22 |
tgaatgagtgaacctattttaaaggcaacaaaaa-ttggaaggtgcaccctagaaatct-aattgagtggaagtgagtgaat |
101 |
Q |
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| T |
49328808 |
tgaatgagtgaaccttttttataggcaaaaaaatgttgtaaggtgcacataagaaatcttaattgagtggaagtgagtgaat |
49328727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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