View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10311_low_7 (Length: 332)
Name: NF10311_low_7
Description: NF10311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10311_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 41262293 - 41262598
Alignment:
| Q |
15 |
cagttttctgcatattgtgttgaatacataccatttaccaacccattaatgttctcctaactctacttacaatctgatttctagcagccacacctgttaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41262293 |
cagttttctgcatattgtgttgaatacataccatttaccaacccattaatgttctcctaactctacttacaatctgatttctagcagccacacctgttaa |
41262392 |
T |
|
| Q |
115 |
ttgaaattcacagttctcatccaaaagaaacctgtaaacctcccattcatgctctgatgccaaataccttcctacttcagcctaacacaaagggaattca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41262393 |
ttgaaattcacagttctcatccaaaagaaacctgtaaacctcccattcatgctctgatgccaaataccttcctacttcagcctaacacaaagggaattca |
41262492 |
T |
|
| Q |
215 |
aggattataatttttatttattacctaagtaatagtctaatagataacattcaatgcttattttgaaatctagtaatagttttatagtaataaagacacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41262493 |
aggattataatttttatttattacctaagtaatagtctaatagataacattcaatgcttattttgaaatctagtaatagttttatagtaataaagacacc |
41262592 |
T |
|
| Q |
315 |
acttct |
320 |
Q |
| |
|
|||||| |
|
|
| T |
41262593 |
acttct |
41262598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 7464494 - 7464436
Alignment:
| Q |
81 |
ttacaatctgatttctagcagccacacctgttaattgaaattcacagttctcatccaaa |
139 |
Q |
| |
|
||||| |||||||||||||| | || |||||||||||||||||||||||||||||||| |
|
|
| T |
7464494 |
ttacagtctgatttctagcaacagcatctgttaattgaaattcacagttctcatccaaa |
7464436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University