View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_high_1 (Length: 652)
Name: NF10312_high_1
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 9 - 631
Target Start/End: Complemental strand, 51045443 - 51044852
Alignment:
| Q |
9 |
acgtaggtatatggatcattgaaaaattaataaatagttctccaatatttattaagggatattaacttcactcttaatgttaataatatacaatacaata |
108 |
Q |
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| T |
51045443 |
acgtaggtatattgatcattgaaaaattaataaatagttctccaatatttattaagggatattaacttcactcttaat------aatatacaa----ata |
51045354 |
T |
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| Q |
109 |
gttatacaatcaaactttctcaaaagtaaagagggggaaccatgcatcataatactctaatcttttgctagaaattttctgtgctatatatttttcctac |
208 |
Q |
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| T |
51045353 |
gttatacaatcaaactttctcgaaagtaaagagggggaaccatggatcataatactctaatattttgctagaaattttctgtgctatatatttttcctac |
51045254 |
T |
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| Q |
209 |
tttgtttcaccaacaaaaatacagttcataataattggtgaaatacatcaatattacttagatcttctgacagcgatgttaaaggatcataggtactgaa |
308 |
Q |
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| T |
51045253 |
tttgtatcaccaacaaaaatacagttcataataattggtgaaatacatcaatattactta---------------------aaggatcataggtactgaa |
51045175 |
T |
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| Q |
309 |
atccattgaatttgtcttgttgatgttgtattttactgcattattcacttcaaactgcaacaaaggatccaacagcttattgtaattttcaccttcccat |
408 |
Q |
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| T |
51045174 |
atccattgaatttgtcttgttgatgttgtattttactgcattattcacttcaaactgcaacaaaggatccaacagcttattttaattttcaccttcccat |
51045075 |
T |
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| Q |
409 |
gagattaacccacctgctgtattttcattaatcatgttggaaaatgagttgttgctgatgttgtctgaagagaagaaatagcttgaattggttccaaatt |
508 |
Q |
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| T |
51045074 |
gagattaacccacctgctgtattttcattaatcatgttggaaaatgagttgttgctgatgttgtctgaagagaagaaatagcttgaattggttccaaatt |
51044975 |
T |
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| Q |
509 |
ggttcagttcaaattgtaattgcaatggatcaagatcaaatgttggcttattcattagaagtgcttctgaatattcatgtgaggattctagcattaaagt |
608 |
Q |
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| T |
51044974 |
ggttcagttcaaattgtaattgcaatggatcaagatcaaatgttggcttattcattagaagtgcttctgaatattcatgtgaggattctagcattaaagt |
51044875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 528
Target Start/End: Original strand, 34626051 - 34626105
Alignment:
| Q |
474 |
tgaagagaagaaatagcttgaattggttccaaattggttcagttcaaattgtaat |
528 |
Q |
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| T |
34626051 |
tgaagagaagaaatagcttgaattgtttccaaactgattctgttcaaattgtaat |
34626105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 34625758 - 34625819
Alignment:
| Q |
256 |
tcaatattacttagatcttctgacagcgatgttaaaggatcataggtactgaaatccattgaatt |
320 |
Q |
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| T |
34625758 |
tcaatattacttagatcttctgacagtgacgttaaagg---atatgtactgaaatctattgaatt |
34625819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 447
Target Start/End: Original strand, 34625874 - 34625922
Alignment:
| Q |
396 |
ttcaccttcccatgagattaacccacctgctgtattttcattaatcatgttg |
447 |
Q |
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| T |
34625874 |
ttcaccttcccatgagattaatccacctgc---attttcattaatcatgttg |
34625922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 34625668 - 34625700
Alignment:
| Q |
192 |
ctatatatttttcctactttgtttcaccaacaa |
224 |
Q |
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| T |
34625668 |
ctatatatttttcctactttgtttcaccaacaa |
34625700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 603
Target Start/End: Original strand, 39674669 - 39674711
Alignment:
| Q |
561 |
cattagaagtgcttctgaatattcatgtgaggattctagcatt |
603 |
Q |
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| T |
39674669 |
cattaaaagtgcttctgaatattcctgtgaggattctaacatt |
39674711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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