View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10312_high_4 (Length: 557)
Name: NF10312_high_4
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_high_4 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 11 - 543
Target Start/End: Original strand, 6937974 - 6938506
Alignment:
| Q |
11 |
ccaggtgtgtagattagaaacatataattggatataagaaattaactttaaaaccattagtttttcaatttaagattggaactcttcattttttcctttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6937974 |
ccaggtgtgtagattagaaacatataattggatataagaaattaactttaaaaccattagtttttcaatttaagattggaactctttattttttcctttt |
6938073 |
T |
|
| Q |
111 |
caaaagtgaattaccactataaggccaataagtcacgccttcaaagaaagacccttttttcggtgacagaaacagttaggttttatgcacaaccaacccc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6938074 |
caaaagtgaattaccactataaggccaataagtcacgccttcaaagaaagacccttttttcggtgacagaaacagttaggttttatgcacaaccaacccc |
6938173 |
T |
|
| Q |
211 |
aattaaacgtatcttttgaattgacttatttgagcttataactgttgagtattgctcatatatacagcaatgagggacaaggggcagagaaggagcaaag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6938174 |
aattaaacgtatcttttgaattgacttatttgagcttataactgttgagtattgctcatatatacagcaatgagggacaaggggcggagaaggagcaaag |
6938273 |
T |
|
| Q |
311 |
ctagtggagaattgtgaaactccctctgctcctgcccttgagtttggcccaaacgtgtgttagtcccaattgttgttcgcctcttgcagtacggttcagg |
410 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6938274 |
ctagtggagcattgtgaaactccctctgctcctgcccttgagtttggcccaaacgtgtgttagtcccaattgttgttcgcctcttgcagtacggttcagg |
6938373 |
T |
|
| Q |
411 |
tgtattattgtaaagtgtaaactgaaccaaagtactatatatatttgttataacattgtaaaccctaatttatgacaaaaataaatggaactataactgc |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6938374 |
tgtattattgtaaagtgtaaactgaaccaaagtactatatatatttgttataacattgtaaaccctaatttatgacaaaaataaatggaactataactgt |
6938473 |
T |
|
| Q |
511 |
tctatagtcgcataggtaggcatcataggccaa |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6938474 |
tctatagtcgcataggtaggcatcataggccaa |
6938506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 518
Target Start/End: Original strand, 39129407 - 39129470
Alignment:
| Q |
455 |
ttgttataacattgtaaaccctaatttatgacaaaaataaatggaactataactgctctatagt |
518 |
Q |
| |
|
||||| ||||| |||||| ||||||| || ||||||||| | | |||||||||||||||||||| |
|
|
| T |
39129407 |
ttgttgtaacactgtaaaacctaattcattacaaaaatatacgaaactataactgctctatagt |
39129470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 530
Target Start/End: Complemental strand, 34344377 - 34344273
Alignment:
| Q |
426 |
tgtaaactgaaccaaagtactatatatatttgttataacattgtaaaccctaatttatgacaaaaataaatggaactataactgctctatagtcgcatag |
525 |
Q |
| |
|
||||||||||||| ||||| | |||||||| ||| |||| |||||||||||||| || ||| ||||||||| |||||| |||||||||||| || || |
|
|
| T |
34344377 |
tgtaaactgaaccgaagtattgtatatattggttgtaacgctgtaaaccctaattcatcacagaaataaatgtaactatcggtgctctatagtcacagag |
34344278 |
T |
|
| Q |
526 |
gtagg |
530 |
Q |
| |
|
||||| |
|
|
| T |
34344277 |
gtagg |
34344273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 557
Target Start/End: Original strand, 23849784 - 23849893
Alignment:
| Q |
448 |
tatatatttgttataacattgtaaaccctaatttatgacaaaaataaatggaactataactgctctatagtcgcataggtaggcatcataggccaaactg |
547 |
Q |
| |
|
||||| || ||| ||||| |||||||||| ||| || ||| ||||||| |||||| |||||| |||||||| | |||||||| ||| |||| ||||| |
|
|
| T |
23849784 |
tatatcttggttgtaacaatgtaaaccctgattcataacagaaataaacaaaactatgactgctttatagtcgtaagggtaggcaccattggccgaactg |
23849883 |
T |
|
| Q |
548 |
cgtgaacaaa |
557 |
Q |
| |
|
|||||||||| |
|
|
| T |
23849884 |
cgtgaacaaa |
23849893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 42500844 - 42500882
Alignment:
| Q |
345 |
cccttgagtttggcccaaacgtgtgttagtcccaattgt |
383 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
42500844 |
cccttgggtttggcccaaacgtgtgttaggcccaattgt |
42500882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 54619100 - 54619042
Alignment:
| Q |
324 |
gtgaaactccctctgctcctgcccttgagtttggcccaaacgtgtgttagtcccaattg |
382 |
Q |
| |
|
||||| |||||||||| |||||||||| |||||| | ||||||||||||| ||||||| |
|
|
| T |
54619100 |
gtgaagctccctctgcccctgcccttgtgtttggtcaaaacgtgtgttaggtccaattg |
54619042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 544
Target Start/End: Complemental strand, 35223434 - 35223381
Alignment:
| Q |
491 |
ataaatggaactataactgctctatagtcgcataggtaggcatcataggccaaa |
544 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| || |||||| ||| ||||||| |
|
|
| T |
35223434 |
ataaacggaactatagctgctctatagtcgcagagataggcaccattggccaaa |
35223381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University