View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_high_5 (Length: 450)
Name: NF10312_high_5
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 8567121 - 8566696
Alignment:
| Q |
17 |
aattcaagtataatggcaaggtaactctaaaataattaatgtcatcttcaaggtacaaagacgtgctttacaaacataaccctcttctctcatggttgtt |
116 |
Q |
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| T |
8567121 |
aattcaagtataatggcaaggtaactctaaaataattaatgtcatcttcaaggtacaaagacgtgctttacaaacataaccctcttctctcatggttgtt |
8567022 |
T |
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| Q |
117 |
atgttggtaaaatccattaaatccaattacctatgtcaccccaagagtttttagactactctaatgtttacaaatccttgtctaatcttataagttcaac |
216 |
Q |
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| T |
8567021 |
atgttgctaaaatccattaaatccaattacctatgtcaccccaagagtttatagactactctcatgtttacaaatccttgtctaatcttataagttcaac |
8566922 |
T |
|
| Q |
217 |
aatatccactatctttctataaatattgttgccttgatttttcttaaaagcaataaaattagattggactttgaaacaccacaataaaagaaaataaaga |
316 |
Q |
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| T |
8566921 |
aatatccactatctttctataaatattgttgccttgatttttcttaaaagcaataaaattagattggactttgaaacaccacaataaaagaaaataaaga |
8566822 |
T |
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| Q |
317 |
gatcatggatagttcattctggtggggcttctaacacatacattgcatgtattccatccaagtgagacttataattcacacttgacatataacaactcat |
416 |
Q |
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| T |
8566821 |
gatcatggatagttcatcctggtggggcttctaacacatatattgcatgtatttcatacaagtgggacttataactcacacttgacatataacaactcat |
8566722 |
T |
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| Q |
417 |
catatgtaaattcttccattcatctc |
442 |
Q |
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| T |
8566721 |
catatgtaaattcctccattcatctc |
8566696 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 42452316 - 42452252
Alignment:
| Q |
245 |
ttgccttgatttttcttaaaagcaataaaattagattggactttgaaacaccacaataaaagaaa |
309 |
Q |
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| T |
42452316 |
ttgctttgatttttcttaaaaacgataagattagattggactttgaaatcccacaacaaaagaaa |
42452252 |
T |
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