View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_high_7 (Length: 306)
Name: NF10312_high_7
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 120 - 292
Target Start/End: Original strand, 32393745 - 32393916
Alignment:
| Q |
120 |
taactattaactatctggctatgcgggcccc-tgagagccatgatgacatgctatgatggcacattaattttgtgaaattatttgggtgaataaaattag |
218 |
Q |
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| T |
32393745 |
taactatcaactatctggctatgcgggccccctgagagccatgatgacatgctatgatggcacattaattttgtgaaattatttgggtgaataaaattac |
32393844 |
T |
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| Q |
219 |
atatatcagagagtgtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctgtg |
292 |
Q |
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| T |
32393845 |
atatatc--agagtgtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctgtg |
32393916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 32393358 - 32393455
Alignment:
| Q |
20 |
gatattacttgtatcaactcttggtgggtgatgtgtagcactaaatagcaatcttcaagctgaccaaattaattgttggcaagaaatatgcttattcat |
118 |
Q |
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| T |
32393358 |
gatattacttgtatcaactcttggtgggtgatgtgtagcactaaatagcaatcttcaagctgacc-aattaattgttggcaagaaatatgcttattcat |
32393455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 26162581 - 26162783
Alignment:
| Q |
20 |
gatattacttgtatcaactcttggtgggtgatgtgtagcactaaatagcaatcttcaagctgaccaaattaattgttggcaagaaatatgcttattcatc |
119 |
Q |
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| T |
26162581 |
gatattacttgtactagctcttggtgggtgatgtgtaacactaaatagcaatcttcaagatgaccaa-ttaattgttggcaggaaatatgtttatccatc |
26162679 |
T |
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| Q |
120 |
taactattaactatctggctatgcgggcccctgagagccatgatgac-atgctatgatggcac-attaattttgtgaaattatttgggtgaataaaatta |
217 |
Q |
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| T |
26162680 |
taactatcaacaatctggctatgtgggatcctgagagccatgatgacaatgc-ctgatggcacaattaattttgtgaaatgatttgggtgaataaaatta |
26162778 |
T |
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| Q |
218 |
gatat |
222 |
Q |
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|||| |
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| T |
26162779 |
catat |
26162783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 26163085 - 26163142
Alignment:
| Q |
233 |
gtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctg |
290 |
Q |
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| T |
26163085 |
gtcctttcttccactctttttcaaacttgacaaattggagtgtggtaagcatggtctg |
26163142 |
T |
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