View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_low_1 (Length: 836)
Name: NF10312_low_1
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 16 - 597
Target Start/End: Complemental strand, 47436283 - 47435702
Alignment:
| Q |
16 |
acaatcaacttagaattgagaatgctagattaaaggttgaggtatatatacttttaaattgcttatttatagtctctactataaaacaatttannnnnnn |
115 |
Q |
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| T |
47436283 |
acaatcagcttagaattgagaatgctagattaaaggttgaggtatatatacttttaaattgcttatttatagtctctactataaaacaatttattttttt |
47436184 |
T |
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| Q |
116 |
aataatataatttacctccactgcactgtgtatataaaattgcttttatttctcattttattct--tggttgaactaatggttatgcatgttttgttaat |
213 |
Q |
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| T |
47436183 |
aataatataatttacctccactgcactgtgtatataaaattgcttttatttctcattttcttctattggttgaactaatggttatgcat--tttgttaat |
47436086 |
T |
|
| Q |
214 |
tgttttgtgtcttagattgaaatgttgacaggaaaggtaataaacgatgtagatgtagtgggttcctcctctaaatttggtcaaatgcctacacctgcat |
313 |
Q |
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| T |
47436085 |
tcttttgtgtcttagattgaaatgttgacaggaaaggtaataaacgatgtagatgtagtgggttcctcctctaaaattggtcaaatgcctacacctgcat |
47435986 |
T |
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| Q |
314 |
ttgaaataggaagtaatagtgacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435985 |
ttgaaataggaagtaatagtgacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagt |
47435886 |
T |
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| Q |
414 |
tgacaaagcaacgattgtagaacttgctgtggtttctatggaggaactcacaatgttaactcttgctggatcccctttatggatttccaccaatgacact |
513 |
Q |
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| T |
47435885 |
tgacaaagcaacgattgtagaacttgctgtggtttctatggaggaactcacaatcttaactcttgctggatcccctttatggatttccaccaatgacact |
47435786 |
T |
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| Q |
514 |
gagattctaaatgaagctgaatacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
597 |
Q |
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| T |
47435785 |
gagattctaaatgaagctgaatacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
47435702 |
T |
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