View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_low_10 (Length: 417)
Name: NF10312_low_10
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 33882928 - 33882546
Alignment:
| Q |
17 |
agcatttaagcaggaaaacttggagattactttgaggtagaagcaagaaaacaattatgcnnnnnnntaaacactcatggctcattcatcttgtttatct |
116 |
Q |
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| T |
33882928 |
agcatttaagcaggaaaacttggagattactttgaggtagaagcaag-------ttatgcaaaaaaataaacactcatggctcattcatcttgtttatct |
33882836 |
T |
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| Q |
117 |
acaatacatcaacttgaatcacaaattatgagactaaggccctgtttaggagtttgggagaggtgactatggaaaaaggaaggaaaatgagggaactcaa |
216 |
Q |
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| T |
33882835 |
acaatacatcaacttgaatcacaaattatgagactaaggccctgtttaggagtttgcgaggggtgactatggaaaaaggaaggaaaatgagggaactcaa |
33882736 |
T |
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| Q |
217 |
aagttgtattagaggaaggttttagaggacttaaataaattctccaaatccaatctatcttgttacaagatgcgttggattcgctaaacatcagggagac |
316 |
Q |
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| T |
33882735 |
aagttgtattagaggaaggttttagaggatttaaataaattctccaaatccaatctatcttgttacaagatgcgttggattcgctaaacatcagggagac |
33882636 |
T |
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| Q |
317 |
ttggcggaacaacttatcttgtaccatgtttgatttagaaactagtcatgtgattagacaaaataatacaagacaaaaacaagaattctt |
406 |
Q |
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| T |
33882635 |
taggcggaacaacttatcttgtaccatgtttgatttagaaactagtcatgtgattagacaaaataatacaagacaaaaacaagaattctt |
33882546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 31632863 - 31632937
Alignment:
| Q |
207 |
gggaactcaaaagttgtattagaggaaggttttagaggacttaaataaattctccaaatccaatctatcttgtta |
281 |
Q |
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| T |
31632863 |
gggaactcaagaaatgtattgaaggaaggttttggagggcttaaataaattcttcaaatccaatctatgttgtta |
31632937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 37909020 - 37909091
Alignment:
| Q |
210 |
aactcaaaagttgtattagaggaaggttttagaggacttaaataaattctccaaatccaatctatcttgtta |
281 |
Q |
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| T |
37909020 |
aactcaaaagttgtattggaggagggttttggagggtttatatgaattcttcaaattcaatctatattgtta |
37909091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 38867534 - 38867484
Alignment:
| Q |
231 |
gaaggttttagaggacttaaataaattctccaaatccaatctatcttgtta |
281 |
Q |
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| T |
38867534 |
gaaggttttggaggacttaggtaaattcttcaaatccaatctatgttgtta |
38867484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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