View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_low_11 (Length: 384)
Name: NF10312_low_11
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 42450392 - 42450200
Alignment:
| Q |
1 |
gctaatcacatatggcaactgtatctgtgcatgtttcagaaacaagactgaaagaaaaatatgtgtttcgcttccaatatattaaagaaaaacatgtcaa |
100 |
Q |
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| T |
42450392 |
gctaatcacatatggcaactgtgtctgtgcatgtttcagaaacaagactga--gaaaaatatgtgtttcgcttccaatatattaaagaaaaacatgtcaa |
42450295 |
T |
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| Q |
101 |
tctttccacatattacctaatttttaatatgaaattcataagctcaattgctaaaccatcaaacttgaacacgcctagttgactgatttggaaca |
195 |
Q |
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| T |
42450294 |
tctttccacatattacctaatttttaatatgaaattcataagctcaattgctaaaccatcaaacttgaacacgcctagttaactgatttggaaca |
42450200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 238 - 370
Target Start/End: Complemental strand, 42450157 - 42450033
Alignment:
| Q |
238 |
caattcatacagagtgttatgaagttcgaacatatatatacaagttaaaatcctaatattgaatcacatacctcgagcgaaaacaattaattatttattc |
337 |
Q |
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| T |
42450157 |
caattcatacagagtgtaatgaagttcgaacatatatatacaagttaaaatcctaatatcgaatcacatacctcgagcgaaaacaattca--------tc |
42450066 |
T |
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| Q |
338 |
ctttgatcggaagaaagcttttcttgtactttc |
370 |
Q |
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| T |
42450065 |
ctttgatcggaagaaagcttttcttgtactttc |
42450033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 42262669 - 42262615
Alignment:
| Q |
316 |
gaaaacaattaattatttattcctttgatcggaagaaagcttttcttgtactttc |
370 |
Q |
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| T |
42262669 |
gaaaacaactacgtatttattccttcaatcggaagaaagcttttcttgtactttc |
42262615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 42263463 - 42263426
Alignment:
| Q |
126 |
aatatgaaatt-cataagctcaattgctaaaccatcaa |
162 |
Q |
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| T |
42263463 |
aatatgaaatttcataagctcaattgctaaaccatcaa |
42263426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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