View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10312_low_15 (Length: 250)
Name: NF10312_low_15
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42352982 - 42352743
Alignment:
| Q |
1 |
agaaacacttttgccttattagtgaaaaggctacagtttcttaactcacgttgaaacgctaattgtaggaaaattcactctttatcacacaactcatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42352982 |
agaaacacttttgccttattagtgaaaaggctacagtttcttaactcacgttgaaacgctaattgtaggaaaattcactctttatcacacaactcatgat |
42352883 |
T |
|
| Q |
101 |
agaaataacgaacattgacgatgactttgagtagtgtggatgggaccttatttaataagaacttaataattcaaattgagctaactaaacaaatcgtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42352882 |
agaaataacgaacattgacgatgactttgagtagtgtggatgggaccttatttaataagaacttaataattcaaattgagctaactaaacaaatcgtatt |
42352783 |
T |
|
| Q |
201 |
tgt-gtcatatgtaacttgtcgaagttcctaccacttcat |
239 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
42352782 |
tgtggtcatatgtaacttgtcgaagtttctaccatttcat |
42352743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University