View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_low_16 (Length: 241)
Name: NF10312_low_16
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_low_16 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 5278690 - 5278470
Alignment:
| Q |
19 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5278690 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacatcaaatcaagacaacaatc |
5278591 |
T |
|
| Q |
119 |
gtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctat |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5278590 |
gtctctttaccaaggtgctcaacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctat |
5278491 |
T |
|
| Q |
219 |
tgctggacttagcagtcaaaa |
239 |
Q |
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||||||||||||||||||||| |
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| T |
5278490 |
tgctggacttagcagtcaaaa |
5278470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 5282406 - 5282628
Alignment:
| Q |
19 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
5282406 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatc |
5282505 |
T |
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| Q |
119 |
gtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctat |
218 |
Q |
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||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5282506 |
gtctcttcaccaaagtgctcaacaagggtgatgtgtttgtgttcccgattggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctat |
5282605 |
T |
|
| Q |
219 |
tgctggacttagcagtcaaaacc |
241 |
Q |
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||||||||||||||||||||||| |
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| T |
5282606 |
tgctggacttagcagtcaaaacc |
5282628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 5286671 - 5286451
Alignment:
| Q |
19 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5286671 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacttcaaatcaagacaacaatc |
5286572 |
T |
|
| Q |
119 |
gtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctat |
218 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
5286571 |
gtctctttaccaaggtgctcaacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgccgttgctat |
5286472 |
T |
|
| Q |
219 |
tgctggacttagcagtcaaaa |
239 |
Q |
| |
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||||||||||||||||||||| |
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| T |
5286471 |
tgctggacttagcagtcaaaa |
5286451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 20353798 - 20354018
Alignment:
| Q |
19 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
20353798 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatc |
20353897 |
T |
|
| Q |
119 |
gtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctat |
218 |
Q |
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|
||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20353898 |
gtctcttcaccaaagtgctcaacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaacgctgttgctat |
20353997 |
T |
|
| Q |
219 |
tgctggacttagcagtcaaaa |
239 |
Q |
| |
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||||||||||||||||||||| |
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| T |
20353998 |
tgctggacttagcagtcaaaa |
20354018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 20358057 - 20357837
Alignment:
| Q |
19 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20358057 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtacttgaaggcactctttatgttggatttgtcacttcaaatcaagacaacaatc |
20357958 |
T |
|
| Q |
119 |
gtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctat |
218 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||| || |||||||| |
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| T |
20357957 |
gtctctttaccaaagtgctcaacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactgaatgtgggatatggcaatgccgttgctat |
20357858 |
T |
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| Q |
219 |
tgctggacttagcagtcaaaa |
239 |
Q |
| |
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||||||||||||||||||||| |
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| T |
20357857 |
tgctggacttagcagtcaaaa |
20357837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 6235643 - 6235421
Alignment:
| Q |
19 |
ttaaacccacctcacatccaccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatc |
118 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
6235643 |
ttaaacccacctcacattcaccctaggggaacagagatccttatagtactcgaaggcactctttatgttggatttgtcacgtccaatcaagacaacaatc |
6235544 |
T |
|
| Q |
119 |
gtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctat |
218 |
Q |
| |
|
||||||| ||||| || || |||||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
6235543 |
gtctcttcaccaaagtgctaaacaagggtgatgtgtttgtgttcccaattggtcttattcattttcaactaaatgtgggatatggcaacgctgttgctat |
6235444 |
T |
|
| Q |
219 |
tgctggacttagcagtcaaaacc |
241 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6235443 |
tgctggacttagcagtcaaaacc |
6235421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 35313508 - 35313721
Alignment:
| Q |
28 |
cctcacatccaccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctcttta |
127 |
Q |
| |
|
||||||| |||||| ||||| || ||||| ||| |||| ||||||| || ||||| ||||||||||| | |||||||||||||| || |||||||| | |
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| T |
35313508 |
cctcacacccacccaagaggcaccgagattcttgtagttttggaaggcacactttacgttggatttgtttcctcaaatcaagacaataaccgtctcttca |
35313607 |
T |
|
| Q |
128 |
ccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggact |
227 |
Q |
| |
|
|||| ||| | ||||| |||||||| |||||||| || |||||||| ||||| || || |||| || || ||||| | ||| |||| |||||||| || |
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| T |
35313608 |
ccaaagtattgaacaaaggtgatgtatttgtgtttccaatcggtctcattcacttccaattgaacgttggttatggggaggctattgccattgctggtct |
35313707 |
T |
|
| Q |
228 |
tagcagtcaaaacc |
241 |
Q |
| |
|
||| || ||||||| |
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| T |
35313708 |
tagtagccaaaacc |
35313721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 710875 - 710676
Alignment:
| Q |
37 |
caccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtac |
136 |
Q |
| |
|
|||||||||| || ||||| |||||||| |||| |||||||| ||||| || ||||| || || |||| ||| ||| |||||| | || || |||| |
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| T |
710875 |
caccctagagccactgagattcttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaac---cgtctcatcacaaaagtac |
710779 |
T |
|
| Q |
137 |
tcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtca |
236 |
Q |
| |
|
| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || ||||||||||||||||||||||| || |
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| T |
710778 |
tgaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagcagcca |
710679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 239
Target Start/End: Complemental strand, 702528 - 702407
Alignment:
| Q |
118 |
cgtctctttaccaaggtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgcta |
217 |
Q |
| |
|
|||||| |||| || ||||| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || ||||||| |
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|
| T |
702528 |
cgtctcattacaaaagtactgaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgcta |
702429 |
T |
|
| Q |
218 |
ttgctggacttagcagtcaaaa |
239 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
702428 |
ttgctggacttagcagccaaaa |
702407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 37 - 239
Target Start/End: Original strand, 712832 - 713031
Alignment:
| Q |
37 |
caccctagaggaacagagatccttatagtactggaaggtactctttatgttggatttgtcacatcaaatcaagacaacaatcgtctctttaccaaggtac |
136 |
Q |
| |
|
|||||||||| || ||||| |||||||| |||| |||||||| ||||| || ||||| || || |||| ||| ||| |||||| |||| || |||| |
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| T |
712832 |
caccctagagccactgagattcttatagtgttggagggtactctctatgtcgggtttgttacttctaatccagaaaac---cgtctcattacaaaagtac |
712928 |
T |
|
| Q |
137 |
tcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagcagtca |
236 |
Q |
| |
|
| ||||| || |||||||||||||| || || || || ||||| ||||| ||||||| || ||||| || || ||||||||||||||||||||||| || |
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| T |
712929 |
tgaacaaaggagatgtgtttgtgtttccaattggcctcattcactttcaattgaatgttgggtatggaaatgcagttgctattgctggacttagcagcca |
713028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 717815 - 717709
Alignment:
| Q |
133 |
gtactcaacaagggtgatgtgtttgtgttcccgatcggtcttattcattttcagctgaatgtgggatatggcaacgctgttgctattgctggacttagca |
232 |
Q |
| |
|
||||| ||||| || |||||||||||||| || || ||||| ||||| || || |||||||||||||||| || || |||||||||||||||||||||| |
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| T |
717815 |
gtactaaacaaaggagatgtgtttgtgtttccaattggtctcattcacttccaattgaatgtgggatatggaaatgcagttgctattgctggacttagca |
717716 |
T |
|
| Q |
233 |
gtcaaaa |
239 |
Q |
| |
|
| ||||| |
|
|
| T |
717715 |
gccaaaa |
717709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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