View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_low_3 (Length: 637)
Name: NF10312_low_3
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 386 - 624
Target Start/End: Complemental strand, 13793524 - 13793282
Alignment:
| Q |
386 |
actcgtatgtaaaatttgttactgaataggtctaattgatcatatgtactcataaatataaacttcaaaattgactttaccaaaccgcgtc----ttttg |
481 |
Q |
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| T |
13793524 |
actcgtatgtaaaaattgttactgaataggtctaattgatcatatgtactcataaatataaacttcaaaattgactttatcaaaccgcgtcataattttg |
13793425 |
T |
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| Q |
482 |
caccctttgatcgggggtccttgctacgtcactggactatggtaaatgccctggatcttgaaaaagctatgtgttatagataaagacaaggctctatatc |
581 |
Q |
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| T |
13793424 |
caccctttgatcggggatccttgctacgccactggactttggtaaatgccctggatcttgaaaaagctctgtgttatagataaagacaaggctctatatc |
13793325 |
T |
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| Q |
582 |
aagaataatggcaactttgtgaaagtcaatgctatgtgttcat |
624 |
Q |
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| T |
13793324 |
aagaataatggcaactttgtgaaagtcaatgctacgtgttcat |
13793282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 13795166 - 13794976
Alignment:
| Q |
18 |
catggttacccttcaagctttggtatagaatgaggaaattcttatgcaaatataatggaatgtgaagattcatattccaaattttatggtgcttattcaa |
117 |
Q |
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| T |
13795166 |
catggttacccttcaagctttggtagaggatgaggaaattcttatgcaaatatgatggaatgtgaagattcatattccaaattttctggtgcttattcaa |
13795067 |
T |
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| Q |
118 |
gtaaaaatgatgatggtgtaatgattctgacaaaagattagtaccagaacttgatgactgtgctagagaataataatattgatgcaaaggg |
208 |
Q |
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| T |
13795066 |
gtaaaaatgatgatggtgtaatgattctgacaaaagattagtaccagaacttgatgactgtgctagagaaaaatgatattgatgcaaaggg |
13794976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 13794971 - 13794916
Alignment:
| Q |
305 |
gattgtagacaaaggtgcaacatatcacacttgctatgacataaattggcttaaag |
360 |
Q |
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| T |
13794971 |
gattgtagacataggtgcaacatatcacacttgctatgacataaattggcttaaag |
13794916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 192 - 343
Target Start/End: Original strand, 27912032 - 27912183
Alignment:
| Q |
192 |
aatattgatgcaaaggggtcaacaaatgaggtgaaagcaagcagctcagttgccaaaattggaggtaaattttatgctaaaaactctagtagtaaatatg |
291 |
Q |
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| T |
27912032 |
aatattgatgcaaaagactcaacaaatgtgatgaaagcaagtagctcagttgctaacattggaggtaaattctatgctgatcattctagatgaaaatatg |
27912131 |
T |
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| Q |
292 |
atgatacaagctggattgtagacaaaggtgcaacatatcacacttgctatga |
343 |
Q |
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| T |
27912132 |
atgatacaagttggattgtagatacatgtgccacacatcacatttgccatga |
27912183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 471
Target Start/End: Original strand, 33931915 - 33931993
Alignment:
| Q |
393 |
tgtaaaatttgttactgaataggtctaatt-gatcatatgtactcataaatataaacttcaaaattgactttaccaaacc |
471 |
Q |
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| T |
33931915 |
tgtaaaaattgttactaaataggtctaatttgaccatatgaactcataa-tataaacttgaaaattgacttgaccaaacc |
33931993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 476
Target Start/End: Original strand, 16702979 - 16703044
Alignment:
| Q |
412 |
taggtctaattga-tcatatgtactcataaatataaacttcaaaattgactttaccaaaccgcgtc |
476 |
Q |
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| T |
16702979 |
taggtctaatttaatcagatgaactcataaatataaacttaaaaaatgactttaccaaaccgcgtc |
16703044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 610
Target Start/End: Original strand, 34494057 - 34494122
Alignment:
| Q |
545 |
aagctatgtgttatagataaagacaaggctctatatcaagaataatggcaactttgtgaaagtcaa |
610 |
Q |
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| T |
34494057 |
aagctatgtgttatagatatagacaaggctctatatcaagattaaggtcaactctatggaagtcaa |
34494122 |
T |
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