View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10312_low_6 (Length: 458)

Name: NF10312_low_6
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10312_low_6
NF10312_low_6
[»] scaffold0115 (2 HSPs)
scaffold0115 (11-441)||(4961-5391)
scaffold0115 (11-441)||(12701-13131)
[»] chr1 (16 HSPs)
chr1 (59-441)||(19344528-19344915)
chr1 (193-389)||(13543394-13543590)
chr1 (193-389)||(13670554-13670750)
chr1 (193-389)||(15899066-15899262)
chr1 (301-389)||(13420896-13420984)
chr1 (196-389)||(13655150-13655343)
chr1 (193-379)||(13684810-13684996)
chr1 (193-389)||(20477522-20477718)
chr1 (193-379)||(13650088-13650274)
chr1 (325-390)||(16497144-16497209)
chr1 (59-120)||(13670828-13670889)
chr1 (59-124)||(19138033-19138098)
chr1 (68-120)||(13655424-13655476)
chr1 (68-124)||(13685070-13685126)
chr1 (68-124)||(15898936-15898992)
chr1 (68-120)||(20477796-20477848)
[»] chr4 (1 HSPs)
chr4 (200-441)||(8480020-8480261)
[»] chr3 (1 HSPs)
chr3 (114-190)||(328164-328240)
[»] scaffold0006 (8 HSPs)
scaffold0006 (193-389)||(168168-168364)
scaffold0006 (196-389)||(144911-145104)
scaffold0006 (193-389)||(218759-218955)
scaffold0006 (301-389)||(109919-110007)
scaffold0006 (59-120)||(110193-110254)
scaffold0006 (59-120)||(168442-168503)
scaffold0006 (59-120)||(219033-219094)
scaffold0006 (68-120)||(145185-145237)
[»] scaffold0069 (1 HSPs)
scaffold0069 (193-389)||(26548-26744)
[»] chr6 (2 HSPs)
chr6 (193-389)||(22283918-22284114)
chr6 (69-117)||(21814714-21814762)
[»] scaffold0068 (2 HSPs)
scaffold0068 (193-389)||(40858-41054)
scaffold0068 (59-121)||(40719-40781)
[»] chr2 (1 HSPs)
chr2 (193-389)||(38057711-38057907)
[»] scaffold0406 (2 HSPs)
scaffold0406 (301-389)||(7799-7887)
scaffold0406 (59-120)||(7554-7615)
[»] chr8 (1 HSPs)
chr8 (193-389)||(20814675-20814871)
[»] scaffold0012 (4 HSPs)
scaffold0012 (193-389)||(115768-115964)
scaffold0012 (68-120)||(116042-116094)
scaffold0012 (59-120)||(108225-108286)
scaffold0012 (301-389)||(107951-108039)


Alignment Details
Target: scaffold0115 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 4961 - 5391
Alignment:
Q  11 cacagaaagcgtaaacagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcccttgaggatccacactacat 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4961 cacagaaagcggaaacagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcctttgaggatccacactacat 5060  T
Q  111 atatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaatcaaatatctcttccact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5061 atatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaatcaaatatctcttccact 5160  T
Q  211 gaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcacatttattcactttca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5161 gaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcacatttattcactttca 5260  T
Q  311 acgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattg 410  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5261 acgtcttcaatgagtcaaactgatggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggatagtcgaacctatgattg 5360  T
Q  411 caaatttataaactcataaataactagtatc 441  Q
    |||||||||||||||||||||||||||||||    
T  5361 caaatttataaactcataaataactagtatc 5391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Original strand, 12701 - 13131
Alignment:
Q  11 cacagaaagcgtaaacagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcccttgaggatccacactacat 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12701 cacagaaagcggaaacagataatctatgcttccacaatttacaagagatacattttctagattatgaaaactaagaatcctttgaggatccacactacat 12800  T
Q  111 atatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaatcaaatatctcttccact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12801 atatttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattggaatcaaatatctcttccact 12900  T
Q  211 gaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcacatttattcactttca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12901 gaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcacatttattcactttca 13000  T
Q  311 acgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattg 410  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13001 acgtcttcaatgagtcaaactgatggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggatagtcgaacctatgattg 13100  T
Q  411 caaatttataaactcataaataactagtatc 441  Q
    |||||||||||||||||||||||||||||||    
T  13101 caaatttataaactcataaataactagtatc 13131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 59 - 441
Target Start/End: Original strand, 19344528 - 19344915
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctttggcatttcactcaaagtgatttctttcagattt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  19344528 tacattttctagattatgaaaactaagaatcccttgaggatccatagtccatatattttttagctttggcattttactcaaagtgatttctttcagattt 19344627  T
Q  159 gttgcatcctctttacttccccttttcattggaat------caaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtat 252  Q
    ||||||||||||||||||||| |||||| ||||||      |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  19344628 gttgcatcctctttacttccc-ttttcagtggaattcaattcaaatatctctttcactgaagcacagtttgtaatatctagcatctctagattattgtat 19344726  T
Q  253 gttttttacaatgaagaaggaaaaactgctgtgattttgtcacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttca 352  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  19344727 gttttttgcaatgaagaaggaaaaactactgtgattttgtcacatttattcactttcaacgtcttcaatgagtcaaactggcggtgccatattgtcttca 19344826  T
Q  353 agttctccatgtcattcaatatgatttcctctaatttggagagtcgaacctatgattgcaaatttataaactcataaataactagtatc 441  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||    
T  19344827 agttctccatgtcattcaatatgatttcctctaatttggagaatcgaacctatgattgaaaatttatgaactcataaataactagtatc 19344915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 389
Target Start/End: Complemental strand, 13543590 - 13543394
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| |||||| ||||||||||||  || | | |||| || ||||| ||||| || | || |||||||||||||||  |    ||||| |    
T  13543590 tcaaatatctcttcaactgaaacacaatttgtaacctccaacttctcaagcttattatatgtgttctgcattgaagaaggaaaaaccaccacaattttct 13543491  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||||||| |||| ||||  |||  ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||||| |||||||||    
T  13543490 tacaattgttcacttccaacatctttgatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcaatatgattttctctaattt 13543394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 389
Target Start/End: Complemental strand, 13670750 - 13670554
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| || |||||||| |||  || | | ||||||| | ||||||||| |||| || |||||||||||||||  |    ||||| |    
T  13670750 tcaaatatctcttcaactaaatcacaatttctaacctccaacttctctagctcattgtatgtgttttgcattgaagaaggaaaaacaaccacaattttct 13670651  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || |||||||||||| ||||| |||  ||||| || || ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  13670650 tacaattgttcactttcaacatcttcgatgtttcaaattgctgatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 13670554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 389
Target Start/End: Original strand, 15899066 - 15899262
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||| ||||| ||||||||||||||| |||  || | |||||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  15899066 tcaaatatttcttcaactgaagcacaatttctaacctccaacatctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttct 15899165  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||||||| |||| |||||||||  | ||| ||||| ||||||| ||| |||||||| ||||| || ||||||||||||| |||||||||    
T  15899166 tacaattgttcacttccaacatcttcaatgttttaaattggtgatgccatactgtcttcaagttgtccatatccttcaatatgattttctctaattt 15899262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 13420984 - 13420896
Alignment:
Q  301 ttcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
    ||||||| |||| |||||||||  ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||||| |||||||||    
T  13420984 ttcacttccaacatcttcaatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcaatatgattttctctaattt 13420896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 389
Target Start/End: Complemental strand, 13655343 - 13655150
Alignment:
Q  196 aatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcac 295  Q
    ||||||||||| ||| ||||||| ||||| |  || | | ||||||| | ||| ||||| |||| || |||||||||||||||  |    ||||| | ||    
T  13655343 aatatctcttcaactaaagcacagtttgtgacctccaacttctctagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttcttac 13655244  T
Q  296 atttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
    | || ||||||| |||| |||||||||  ||||| ||||||||||||||||  |||||||| ||||| || |||| ||| |||| |||||||||    
T  13655243 aattgttcacttccaacatcttcaatgtttcaaattggtggtgccatattgacttcaagttgtccatatccttcagtataattttctctaattt 13655150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 379
Target Start/End: Complemental strand, 13684996 - 13684810
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| |||||||||||||||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  13684996 tcaaatatctcttcaactaaagcacaatttgtaacctccaacttctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttct 13684897  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgattt 379  Q
     ||| || ||||||| |||| ||||||||   ||||| ||| | ||||||||||| |||||||| | ||| || |||||||||||||    
T  13684896 tacaattgttcacttccaacatcttcaatatttcaaattggcgatgccatattgtcttcaagttgttcatatccttcaatatgattt 13684810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 389
Target Start/End: Complemental strand, 20477718 - 20477522
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| ||||||||||| |||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  20477718 tcaaatatctcttcaactaaagcacaatttctaacctccaacttctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttct 20477619  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||||||| |||| ||||| |||  ||||| ||  | ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  20477618 tacaattgttcacttccaacatcttcgatgtttcaaattgccgatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 20477522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 379
Target Start/End: Complemental strand, 13650274 - 13650088
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| |||||||||||||||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  13650274 tcaaatatctcttcaactaaagcacaatttgtaacctccaacttctcaagctcattatatgtattttgcattgaagaaggaaaaaccaccacaattttct 13650175  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgattt 379  Q
     ||| || ||||||| |||| ||||  |||  ||||| ||||  ||||||||||| |||||| | ||||| || |||||||||||||    
T  13650174 tacaattgttcacttccaacatcttggatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcaatatgattt 13650088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 16497144 - 16497209
Alignment:
Q  325 tcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttg 390  Q
    ||||| || |||| ||||||||| |||||||| |||||||| ||||||||||||| ||| ||||||    
T  16497144 tcaaattgatggtaccatattgtcttcaagttgtccatgtccttcaatatgattttctccaatttg 16497209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 13670889 - 13670828
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  13670889 tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca 13670828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 19138033 - 19138098
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt 124  Q
    |||||||  |||||| |||||||||||||| |||||||||||   ||| ||||| |||||||||||    
T  19138033 tacatttattagattttgaaaactaagaattccttgaggatctctactccatatctttttcagctt 19138098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 13655476 - 13655424
Alignment:
Q  68 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  13655476 tagattttgaaaactaagaattccttgaggatctccactccatatctttttca 13655424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 13685126 - 13685070
Alignment:
Q  68 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt 124  Q
    |||||| |||||||||||||| |||| ||||||  |||| ||||| |||||||||||    
T  13685126 tagattttgaaaactaagaattccttcaggatctccactccatatctttttcagctt 13685070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 15898936 - 15898992
Alignment:
Q  68 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttcagctt 124  Q
    |||||| |||||||||||||| |||||||||||  |||| ||||| || ||||||||    
T  15898936 tagattttgaaaactaagaattccttgaggatctccactccatatcttgttcagctt 15898992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 20477848 - 20477796
Alignment:
Q  68 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  20477848 tagattttgaaaactaagaattccttgaggatctccactccatatctttttca 20477796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 200 - 441
Target Start/End: Original strand, 8480020 - 8480261
Alignment:
Q  200 tctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcacattt 299  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8480020 tctcctccactgaagcacaatttgtaatatttagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcacattt 8480119  T
Q  300 attcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcga 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8480120 attcactttcaacgtcttcaatgagtcaaactggtggtgccatattgtcttcaagttctccatgtcattcaatatgatttcctctaatttggagagtcga 8480219  T
Q  400 acctatgattgcaaatttataaactcataaataactagtatc 441  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8480220 acctatgattgcaaatttataaactcataaataactagtatc 8480261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 328164 - 328240
Alignment:
Q  114 tttttcagctttggcatttcactcaaagtgatttctttcagatttgttgcatcctctttacttccccttttcattgg 190  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  328164 tttttcagctttggcatttcagtcaaagtgatttaattcagatttgttgcatcctctttacttacccttttcattgg 328240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 389
Target Start/End: Complemental strand, 168364 - 168168
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| || |||||||| |||  || | | ||||||| | ||||||||| |||| || |||||||||||||||  |    ||||| |    
T  168364 tcaaatatctcttcaactaaatcacaatttctaacctccaacttctctagctcattgtatgtgttttgcattgaagaaggaaaaacaaccacaattttct 168265  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || |||||||||||| ||||| |||  ||||| || || ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  168264 tacaattgttcactttcaacatcttcgatgtttcaaattgctgatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 168168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 196 - 389
Target Start/End: Complemental strand, 145104 - 144911
Alignment:
Q  196 aatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgtcac 295  Q
    ||||||||||| ||| ||||||| ||||| |  || | | ||||||| | ||| ||||| |||| || |||||||||||||||  |    ||||| | ||    
T  145104 aatatctcttcaactaaagcacagtttgtgacctccaacttctctagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttcttac 145005  T
Q  296 atttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
    | || ||||||| |||| |||||||||  ||||| ||||||||||||||||  |||||||| ||||| || |||| ||| |||| |||||||||    
T  145004 aattgttcacttccaacatcttcaatgtttcaaattggtggtgccatattgacttcaagttgtccatatccttcagtataattttctctaattt 144911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 389
Target Start/End: Complemental strand, 218955 - 218759
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| || |||||||| |||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    |||||||    
T  218955 tcaaatatctcttcaactaaatcacaatttctaacctccaacttctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttgt 218856  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||| ||| |||| ||||| |||  ||||| ||||| ||||||||||| |||||| | ||||| || |||||||| |||| |||||||||    
T  218855 tacaattgttcgcttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagctgtccatatccttcaatataattttctctaattt 218759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 110007 - 109919
Alignment:
Q  301 ttcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
    ||||||| |||| ||||| |||  ||||| ||||| ||||||||||| |||||| | ||||| || || |||||||||| |||||||||    
T  110007 ttcacttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagatgtccatatccttaaatatgattttctctaattt 109919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 110254 - 110193
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  110254 tacatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttca 110193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 168503 - 168442
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  168503 tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca 168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 219094 - 219033
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  219094 tacatttattagattttgaaaactaagaattccttgaggatctgcactccatatctttttca 219033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 145237 - 145185
Alignment:
Q  68 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  145237 tagattttgaaaactaagaattccttgaggatctccactccatatctttttca 145185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 389
Target Start/End: Complemental strand, 26744 - 26548
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| |||||||||||||||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  26744 tcaaatatctcttcaactaaagcacaatttgtaacctccaacttctcaagctcattatatgtattttgcattgaagaaggaaaaaccaccacaattttct 26645  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||||||| |||| ||||| |||  ||||| ||||  ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  26644 tacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 26548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 389
Target Start/End: Original strand, 22283918 - 22284114
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| |||||||||||||||  || | | |||| |||| ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  22283918 tcaaatatctcttcaactaaagcacaatttgtaacctccaacttctcaagatcattatatgtgttttgcactgaagaaggaaaaacaaccacaattttct 22284017  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||||||| |||| |||||||||  | ||| ||| | ||||||||||| |||||||| ||||| || |||| || ||||| |||||||||    
T  22284018 tacaattgttcacttccaacatcttcaatgttttaaattggggatgccatattgtcttcaagttgtccatatccttcagtaagattttctctaattt 22284114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 21814762 - 21814714
Alignment:
Q  69 agattatgaaaactaagaatcccttgaggatccacactacatatatttt 117  Q
    ||||| ||||||||||||||||||||||||||  |||| ||||| ||||    
T  21814762 agattttgaaaactaagaatcccttgaggatcttcactccatatctttt 21814714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 389
Target Start/End: Original strand, 40858 - 41054
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||| ||| ||| || ||||||||||||  || | | |||| || | ||||||||| |||| || |||||||||||||||  |    ||||| |    
T  40858 tcaaatatctgttcaactaaatcacaatttgtaacctccaacttctcaagctcattgtatgtgttttgcactgaagaaggaaaaaccaccacaattttct 40957  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||||||| |||  |||||||||  ||||| ||||| ||||||||||| |||||||| | ||| || |||| |||||||| |||||||||    
T  40958 tacaattgttcacttccaaaatcttcaatgtttcaaattggtgatgccatattgtcttcaagttgttcatatccttcagtatgattttctctaattt 41054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 40719 - 40781
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttcag 121  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| ||||||||    
T  40719 tacatttattagattttgaaaactaagaattccttgaggatctccactccatatctttttcag 40781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 389
Target Start/End: Original strand, 38057711 - 38057907
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| ||||||||||| |||  || | | | ||||| | | | |||||||||| ||||||||||||||||||  |    ||||| |    
T  38057711 tcaaatatctcttcaactaaagcacaatttctaacctccaacttttctagctcaatatatgttttttgcaatgaagaaggaaaaaccaccacaattttct 38057810  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
      || || ||||||| |||| |||||||||  | ||| ||||  ||||||||||| |||||||| ||||| || |||||||||||||  ||||||||    
T  38057811 tgcaattgttcacttgcaacatcttcaatgttttaaattggtaatgccatattgtcttcaagttgtccatatccttcaatatgattttttctaattt 38057907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 7799 - 7887
Alignment:
Q  301 ttcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
    ||||||| |||| ||||| |||  ||||| ||||| ||||||||||| |||||||| ||||| || |||| |||||||| |||||||||    
T  7799 ttcacttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcagtatgattttctctaattt 7887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 7554 - 7615
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||||  |||||| ||||||||||||||||||||||||||  |||| ||||| |||||||    
T  7554 tacatttattagattttgaaaactaagaatcccttgaggatcttcactccatatctttttca 7615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 389
Target Start/End: Original strand, 20814675 - 20814871
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| |||||| ||||||||||||  || | | |||| || | ||| |||||  ||| || |||||||||||||||  |    ||||| |    
T  20814675 tcaaatatctcttcaactgaatcacaatttgtaacctccaacttctcaagctcattatatgtaatttgcattgaagaaggaaaaaccaccacaattttct 20814774  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||||||| |||| ||||| |||  ||||| ||||  ||||||||||| |||||| | ||||| || |||| |||||||| |||||||||    
T  20814775 tacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcagtatgattttctctaattt 20814871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 389
Target Start/End: Complemental strand, 115964 - 115768
Alignment:
Q  193 tcaaatatctcttccactgaagcacaatttgtaatatctagcatctctagattattgtatgttttttacaatgaagaaggaaaaactgctgtgattttgt 292  Q
    |||||||||||||| ||| || |||||||| |||  || | | |||| || | ||| ||||| |||| || |||||||||||||||  |    ||||| |    
T  115964 tcaaatatctcttcaactaaatcacaatttctaacctccaacttctcaagctcattatatgtgttttgcattgaagaaggaaaaaccaccacaattttct 115865  T
Q  293 cacatttattcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
     ||| || ||||||| |||| ||||| |||  ||||| ||  | ||||||||||| |||||| | ||||| || ||||||||||||| |||||||||    
T  115864 tacaattgttcacttccaacatcttcgatgtttcaaattgccgatgccatattgtcttcaagctgtccatatccttcaatatgattttctctaattt 115768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 116094 - 116042
Alignment:
Q  68 tagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||| |||||||||||||| |||| ||||||  ||||||||||||||||||    
T  116094 tagattttgaaaactaagaattccttcaggatctccactacatatatttttca 116042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 108286 - 108225
Alignment:
Q  59 tacattttctagattatgaaaactaagaatcccttgaggatccacactacatatatttttca 120  Q
    |||||||  |||||| |||||||||||||| |||||||||||  |||| ||||| |||||||    
T  108286 tacatttattagattttgaaaactaagaattccttgaggatcttcactccatatctttttca 108225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 108039 - 107951
Alignment:
Q  301 ttcactttcaacgtcttcaatgagtcaaactggtggtgccatattgttttcaagttctccatgtcattcaatatgatttcctctaattt 389  Q
    ||||||| |||| ||||||||   ||||| ||||||||||||||||  |||||||| | ||| || || | |||||||| |||||||||    
T  108039 ttcacttccaacatcttcaatttttcaaattggtggtgccatattgacttcaagttgtacatatccttgagtatgattttctctaattt 107951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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