View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10312_low_9 (Length: 424)
Name: NF10312_low_9
Description: NF10312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10312_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 25 - 418
Target Start/End: Complemental strand, 5921207 - 5920815
Alignment:
| Q |
25 |
cttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaat |
124 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5921207 |
cttcctccgctcaagaaggtttactctcttgtggtgcaagaagaaaacaataattctttaccaatttcagtcactgcttcagatgatagtaacatacaat |
5921108 |
T |
|
| Q |
125 |
tgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagact |
224 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5921107 |
tgaatgcttatgaggttaagaaatcacaaggacgtggtaaaggttct--tttgttcattctcaaaaacctactacgtattgcaccttttgtcacaagact |
5921010 |
T |
|
| Q |
225 |
aatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaa |
324 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
5921009 |
aatcacacaattgatttttgttatcaaaaacatggctaccctagttttcctaagcaacaatcaagaggaaatgcagctactcatgagatccttgatgaaa |
5920910 |
T |
|
| Q |
325 |
atggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaaca |
418 |
Q |
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| T |
5920909 |
atggtgcattggatcatggtttggggggctctacaggttctggtacctgtttgtctccagagcaatatactcaacttgtttcctttgctacaaca |
5920815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
| Q |
204 |
tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
259 |
Q |
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| T |
17118914 |
tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg |
17118969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 424
Target Start/End: Original strand, 26968721 - 26968772
Alignment:
| Q |
373 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctag |
424 |
Q |
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|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctag |
26968772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 25 - 412
Target Start/End: Complemental strand, 20325509 - 20325130
Alignment:
| Q |
25 |
cttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaat |
124 |
Q |
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||||| ||||| || || ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20325509 |
cttccacctcttaataaagtttattctcttgtggtgcaagaagaaagcaataactctttaccaatttcaatctctgcttcagatgatagtaacatacaat |
20325410 |
T |
|
| Q |
125 |
tgaatgcttctgaggttaagaaatcacaaggacgtggtaaaggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagact |
224 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| |||||| ||||| ||||||||||| ||| |
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| T |
20325409 |
tgaatgcttctgaggttaagaaatcccaaggacgtggtaaagg-----ttttgttaattctcaaaaacctaataggtactgcactttttgtcacaaaact |
20325315 |
T |
|
| Q |
225 |
aatcacacagttgatttttgttatcaaaaacatggccaccctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaa |
324 |
Q |
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||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||| ||| | | ||| |||||||||||| |||||||| |
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| T |
20325314 |
aatcacacagttgatttttgttatcaactacatggtcatcctagttttcctaagcaacaatctaaagtga---ctgcttctcatgagatccctgatgaaa |
20325218 |
T |
|
| Q |
325 |
atggtgcattggatcatggtttggggggctctacaggttctggtacttgtttgtctccagagcaatatactcaacttgtttccttgct |
412 |
Q |
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| T |
20325217 |
atggtgcattggatcatggtttggggggctctacaggttctggtactagtttgtctccagagcaatatactcaacttgtttccttgct |
20325130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
| Q |
210 |
ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
259 |
Q |
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||||||||||||||||||||||| | || ||||| |||||||||||||| |
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| T |
15756210 |
ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg |
15756259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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