View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10313_low_1 (Length: 409)
Name: NF10313_low_1
Description: NF10313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10313_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 592467 - 592856
Alignment:
| Q |
1 |
atggtgatggaaatataatctgatataagtggaaaaatcctccttacaaccagataatagaggaacatggaaacaaatggagctgggcaccttgcaggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
592467 |
atggtgatggaaatataatctgatataagtggaaaaatcctccttacaaccagagaatagaggaacatggaagcaaatggagctgggcaccttgcaggat |
592566 |
T |
|
| Q |
101 |
agaaaataaaaatgaaactacgaaaataagagcagccagcgatccaacttgatttggtcgacctaatccccagtaaccacttactagttcctttcgtgca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592567 |
tgaaaataaaaatgaaactacgaaaataagagcagccagcgatccaacttgatttggtcgacctaatccccagtaaccacttactagttcctttcgtgca |
592666 |
T |
|
| Q |
201 |
ttttgattacccactctccttatgactttccccctcttctctcttgattctagattagaatcttctctaccactcttttccatttgtcccattcagatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592667 |
ttttgattacccactctccttatgactttccccctcttctctcttgattctagattagaatcttctctaccactcttttccatttgtcccattcagatat |
592766 |
T |
|
| Q |
301 |
ttctcccgtacataactaatggccttatcattaatggtgggcctaaaagtgtaccaaaatgatgtaaaagcaacaaaagttaattagccc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592767 |
ttctcccgtacataactaatggccttatcattaatggtgggcctaaaagtgtaccaaaatgatgtaaaagcaacaaaagttaattagccc |
592856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University