View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10313_low_2 (Length: 371)
Name: NF10313_low_2
Description: NF10313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10313_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 17232797 - 17233152
Alignment:
| Q |
18 |
aaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaaccatgtttttgaaacagtgaattatatcaaatcataagattacgaataacaactta |
117 |
Q |
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| T |
17232797 |
aaaaatgcctgtacaaaaatatttaatcaaattgaaaattggaaccatgtttttgaaacagtgaattatatcaaatcataagattacgaataacaactta |
17232896 |
T |
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| Q |
118 |
atagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtt----nnnnnnnttaca----cagcctcacgaaacaaaat |
209 |
Q |
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| T |
17232897 |
atagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtttgggggagggggtacactatcagcctcacgaaacaaaat |
17232996 |
T |
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| Q |
210 |
aaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttataagactaggtgtgccgccgtgtccgacactcctatgatactcgtcgac |
309 |
Q |
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| T |
17232997 |
aaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttacaagactaggtgtgccgccgtgtccgacactcctatgatactcgtcaac |
17233096 |
T |
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| Q |
310 |
acatgttagacaaccaaaaccgatatcctaaataattttttcttcttctctgcttc |
365 |
Q |
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| T |
17233097 |
acatgttggacaaccaaaaccgatatcctaaataattttttcttcttctatgcttc |
17233152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 32676409 - 32676488
Alignment:
| Q |
266 |
ctaggtgtgccgccgtgtccgacactcctatgatactcgt-cgacacatgttagacaaccaaaaccgatatcctaaataa |
344 |
Q |
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| T |
32676409 |
ctaggtgtgtcgccgtgtccgacactcctatgacacttgtacgacacgtgttggacagctatgaccgatgtcctaaataa |
32676488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 344
Target Start/End: Complemental strand, 11411071 - 11411005
Alignment:
| Q |
279 |
cgtgtccgacactcctatgatactcgtc-gacacatgttagacaaccaaaaccgatatcctaaataa |
344 |
Q |
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| T |
11411071 |
cgtgtccgacactcctatgacacttgtctgacacatgtcggacaactaaaatcgatgtcctaaataa |
11411005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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