View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10313_low_3 (Length: 322)
Name: NF10313_low_3
Description: NF10313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10313_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 45342923 - 45343230
Alignment:
| Q |
1 |
agatttgggcacttgagttacaaaggtttgaggactttgcaatataaacagatggtgaagggccttccacttgttaaagcttcaaataaaagttgtactg |
100 |
Q |
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| T |
45342923 |
agatttgggcacttgagttacaaaggtttgaggactttgcaatataaacagatggtaaagggccttccacttgttaaagcttcaaataaaagttgtactg |
45343022 |
T |
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| Q |
101 |
aatgttttgtcggcaagcaacatagagatgccattccaaagaagagtcaatggagagcttcccaaaaattgcagcttgtacatgctgatgtttgcgggcc |
200 |
Q |
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| T |
45343023 |
aatgttttgtcagcaagcaacatagagatgccattccaaagaagagtcaatggagagcttcccataaattgcagcttgtacatgctgatatttgcgggcc |
45343122 |
T |
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| Q |
201 |
tattactcccaactccaatagcaacaaaaggtactttataacatttattgacgactttagtagaaaagtgtggatttattttcttgctgaaaaatctgaa |
300 |
Q |
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| T |
45343123 |
tattactcccaactccaatagcaacaaaaggtactttataacattcattgacgactttagtagaaaagtgtggatttattttcttgctgaaaaatctgaa |
45343222 |
T |
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| Q |
301 |
gcatttac |
308 |
Q |
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|||||||| |
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| T |
45343223 |
gcatttac |
45343230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 282
Target Start/End: Original strand, 48200498 - 48200646
Alignment:
| Q |
134 |
ttccaaagaagagtcaatggagagcttcccaaaaattgcagcttgtacatgctgatgtttgcgggcctattactcccaactccaatagcaacaaaaggta |
233 |
Q |
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| T |
48200498 |
ttccaaagaaaagtcattggagagcatcacaaaagcttcaactaattcatgctgacttgtgcggtccgatcactcccatatcaaatggcagcaaaaggta |
48200597 |
T |
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| Q |
234 |
ctttataacatttattgacgactttagtagaaaagtgtggatttatttt |
282 |
Q |
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||| || | |||||||| ||||||| | ||||||| |||||||||||| |
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| T |
48200598 |
cttaatcagttttattgatgactttactcgaaaagtttggatttatttt |
48200646 |
T |
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