View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10313_low_4 (Length: 302)

Name: NF10313_low_4
Description: NF10313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10313_low_4
NF10313_low_4
[»] chr3 (5 HSPs)
chr3 (18-291)||(8332966-8333239)
chr3 (72-218)||(8341950-8342096)
chr3 (226-291)||(8341410-8341479)
chr3 (20-75)||(8333268-8333323)
chr3 (160-213)||(26727551-26727604)
[»] chr2 (4 HSPs)
chr2 (110-215)||(29228544-29228649)
chr2 (110-215)||(29341843-29341948)
chr2 (238-291)||(29229172-29229227)
chr2 (238-291)||(29342472-29342527)
[»] scaffold0061 (1 HSPs)
scaffold0061 (107-215)||(29808-29916)
[»] scaffold0017 (2 HSPs)
scaffold0017 (107-215)||(168876-168984)
scaffold0017 (97-145)||(173955-174003)
[»] chr1 (4 HSPs)
chr1 (109-215)||(44144872-44144978)
chr1 (97-211)||(44612085-44612199)
chr1 (160-212)||(44785757-44785809)
chr1 (97-209)||(11544676-11544788)
[»] chr5 (9 HSPs)
chr5 (107-200)||(29507531-29507624)
chr5 (160-200)||(29507656-29507696)
chr5 (160-200)||(29507728-29507768)
chr5 (162-200)||(29507874-29507912)
chr5 (162-200)||(29507946-29507984)
chr5 (162-200)||(29508090-29508128)
chr5 (159-197)||(29508159-29508197)
chr5 (160-200)||(29507800-29507840)
chr5 (160-200)||(29508016-29508056)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 8333239 - 8332966
Alignment:
Q  18 taaattacatatagcatttccataattttgtttgttgtttaagtagaagtttggaagatcaaagttgtaaccaagcatgagagatt--gctacaatgaaa 115  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  8333239 taaattacatatattatttccataatttcgtttgttgtttaagtagaagtttggaagatcaaagttgtaaccaagcatgagagattttgctacaatgaaa 8333140  T
Q  116 gattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 215  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8333139 gattttcgagttggaaagggatttttccaacaagatcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatctttcc 8333040  T
Q  216 ctcttaagagttatacaaacatacacacatatagaaaattgtgtttaaggaatgtgtattttcctgcttccttctt 291  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8333039 ctcttaagagttatacaaac--acacacatatagaaaattgtgtttaaggaaggtgtattttcctgcttccttctt 8332966  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 8342096 - 8341950
Alignment:
Q  72 aagatcaaagttgtaaccaagcatgagagattgctacaatgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaagg 171  Q
    ||||||| | |||||||||||||| ||||||||| | || ||||||||| |||||||||||||||||   ||||||||||||| ||| ||||||||||||    
T  8342096 aagatcagaattgtaaccaagcatcagagattgcaataacgaaagatttccgagttggaaagggattgtaccaacaagatcattaagactgagattaagg 8341997  T
Q  172 tgttgcaattgtgagagattcccaagttgagtaggaatcttcccctc 218  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  8341996 tgttgcaattgtgagagattcccaagttgagtaggaatctttccctc 8341950  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 8341479 - 8341410
Alignment:
Q  226 ttatacaaacatacacacatata----gaaaattgtgtttaaggaatgtgtattttcctgcttccttctt 291  Q
    ||||||||||| |||||||||||    ||||||||||||||||||| |||||||||||||||||||||||    
T  8341479 ttatacaaacacacacacatatatatagaaaattgtgtttaaggaaggtgtattttcctgcttccttctt 8341410  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 8333268 - 8333323
Alignment:
Q  20 aattacatatagcatttccataattttgtttgttgtttaagtagaagtttggaaga 75  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  8333268 aattacatatattatttccataatttcgtttgttgtttaagtagaagtttggaaga 8333323  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 26727604 - 26727551
Alignment:
Q  160 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttc 213  Q
    ||||||| |||||||||||| |||||||| || |||||||||| ||||||||||    
T  26727604 ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttc 26727551  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 29228544 - 29228649
Alignment:
Q  110 atgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaat 209  Q
    ||||||||||| ||||||||||||||||| ||||||  || ||||     || |||| |||||||||||||||||||||||| |||||||||| ||||||    
T  29228544 atgaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaat 29228643  T
Q  210 cttccc 215  Q
    ||||||    
T  29228644 cttccc 29228649  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 215
Target Start/End: Original strand, 29341843 - 29341948
Alignment:
Q  110 atgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaat 209  Q
    ||||||||||| ||||||||||||||||| ||||||  || ||||     || |||| |||||||||||||||||||||||| |||||||||| ||||||    
T  29341843 atgaaagatttccgagttggaaagggattgctccaatgagttcattgttgctaagatcaaggtgttgcaattgtgagagatttccaagttgagaaggaat 29341942  T
Q  210 cttccc 215  Q
    ||||||    
T  29341943 cttccc 29341948  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 29229172 - 29229227
Alignment:
Q  238 acacacatatagaaaattgtgtttaaggaa--tgtgtattttcctgcttccttctt 291  Q
    ||||||||| | | ||| ||||||||||||  ||||||||||||||||||||||||    
T  29229172 acacacatacaaagaatcgtgtttaaggaaggtgtgtattttcctgcttccttctt 29229227  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 29342472 - 29342527
Alignment:
Q  238 acacacatatagaaaattgtgtttaaggaa--tgtgtattttcctgcttccttctt 291  Q
    ||||||||| | | ||| ||||||||||||  ||||||||||||||||||||||||    
T  29342472 acacacatacaaagaatcgtgtttaaggaaggtgtgtattttcctgcttccttctt 29342527  T

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Target: scaffold0061 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 29808 - 29916
Alignment:
Q  107 acaatgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtagg 206  Q
    |||||||||||||| |||||||||||||||||||||||   |||||||     || |||| ||| ||| |||||||||| ||||||||||||||| ||||    
T  29808 acaatgaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaatagg 29907  T
Q  207 aatcttccc 215  Q
    |||||||||    
T  29908 aatcttccc 29916  T

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Target: scaffold0017 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 168984 - 168876
Alignment:
Q  107 acaatgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtagg 206  Q
    |||||||||||||| |||||||||||||||||||||||   |||||||     || |||| ||| ||| |||||||||| ||||||||||||||| ||||    
T  168984 acaatgaaagatttccgagttggaaagggatttctccattcagatcattcctgctaagatcaagatgtcgcaattgtgatagattcccaagttgaatagg 168885  T
Q  207 aatcttccc 215  Q
    |||||||||    
T  168884 aatcttccc 168876  T

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Target: scaffold0017; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 174003 - 173955
Alignment:
Q  97 agagattgctacaatgaaagattttcgagttggaaagggatttctccaa 145  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  174003 agagactgcaacaatgaaagatttccgagttggaaagggatttctccaa 173955  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 44144978 - 44144872
Alignment:
Q  109 aatgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaa 208  Q
    |||||||||||| ||||||||||||||||||||||||  || ||||     || | || ||||||| ||||| ||||||||||||||||||||| |||||    
T  44144978 aatgaaagatttccgagttggaaagggatttctccaatgagttcattgtagctaaaatcaaggtgtcgcaatcgtgagagattcccaagttgagcaggaa 44144879  T
Q  209 tcttccc 215  Q
    |||||||    
T  44144878 tcttccc 44144872  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 44612199 - 44612085
Alignment:
Q  97 agagattgctacaatgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaa 196  Q
    ||||| ||| |||||||||||||| | |||||||||||||||||||||   || ||||     || |||| ||||||| |||||||||||||||||||||    
T  44612199 agagactgcaacaatgaaagatttccaagttggaaagggatttctccagtgagttcattgtcacttagatcaaggtgtcgcaattgtgagagattcccaa 44612100  T
Q  197 gttgagtaggaatct 211  Q
    |||||| ||||||||    
T  44612099 gttgagaaggaatct 44612085  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 44785757 - 44785809
Alignment:
Q  160 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatctt 212  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  44785757 ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctt 44785809  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 11544676 - 11544788
Alignment:
Q  97 agagattgctacaatgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaa 196  Q
    ||||| ||| |||||||||||||| ||||||||||||| ||||||||||  || ||||     || |||| |||||||  ||| ||||||||||| ||||    
T  11544676 agagactgcaacaatgaaagatttccgagttggaaaggaatttctccaatgagttcattgtagctaagatcaaggtgtctcaactgtgagagattgccaa 11544775  T
Q  197 gttgagtaggaat 209  Q
    |||||| ||||||    
T  11544776 gttgagaaggaat 11544788  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 200
Target Start/End: Original strand, 29507531 - 29507624
Alignment:
Q  107 acaatgaaagattttcgagttggaaagggatttctccaacaagatcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttg 200  Q
    ||||||||||||||| |||||| ||||||||| ||||||  || ||||     ||||||| ||||||||| |||||||||||||| ||||||||    
T  29507531 acaatgaaagattttggagttgtaaagggattgctccaattagttcattgtagctgagatcaaggtgttgtaattgtgagagatttccaagttg 29507624  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 29507656 - 29507696
Alignment:
Q  160 ctgagattaaggtgttgcaattgtgagagattcccaagttg 200  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507656 ctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 29507728 - 29507768
Alignment:
Q  160 ctgagattaaggtgttgcaattgtgagagattcccaagttg 200  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507728 ctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
Q  162 gagattaaggtgttgcaattgtgagagattcccaagttg 200  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507874 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
Q  162 gagattaaggtgttgcaattgtgagagattcccaagttg 200  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507946 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
Q  162 gagattaaggtgttgcaattgtgagagattcccaagttg 200  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29508090 gagatcaaggtgttgcaattgtgagagatttccaagttg 29508128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 29508159 - 29508197
Alignment:
Q  159 tctgagattaaggtgttgcaattgtgagagattcccaag 197  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29508159 tctgagatcaaggtgttgcaattgtgagagatttccaag 29508197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 29507800 - 29507840
Alignment:
Q  160 ctgagattaaggtgttgcaattgtgagagattcccaagttg 200  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507800 ctgagatcaagatgttgcaattgtgagagatttccaagttg 29507840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 29508016 - 29508056
Alignment:
Q  160 ctgagattaaggtgttgcaattgtgagagattcccaagttg 200  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  29508016 ctgagatcaagatgttgcaattgtgagagatttccaagttg 29508056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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